• parDG

  • Referenced in 19 articles [sw18743]
  • which belong to the class of Diffuse-Interface models. We develop efficient and reliable numerical...
  • URDME

  • Referenced in 25 articles [sw10400]
  • Reaction-Diffusion Master Equation formalism to model the processes under study. An interface...
  • STEPS

  • Referenced in 18 articles [sw17866]
  • STEPS: Modeling and Simulating Complex Reaction-Diffusion Systems with Python. We describe ... user interface of the program STEPS. STEPS is a simulation platform for modeling and stochastic ... simulation of coupled reaction-diffusion systems with complex 3-dimensional boundary conditions. Setting up such...
  • MFC

  • Referenced in 1 article [sw34768]
  • equation thermodynamically-consistent diffuse-interface models we use to handle such flows, which are coupled...
  • OpenCMISS

  • Referenced in 9 articles [sw11475]
  • partial differential equations described by the models and to visualise results. The OpenCMISS code (opencmiss.org ... embedded coronary flow, and the reaction–diffusion equations that govern the propagation of electrical waves ... also discuss the design of the interfaces that link the sets of physical equations across ... these provide a flexible infrastructure for combining models developed across the VPH/Physiome community...
  • SWAMP

  • Referenced in 1 article [sw02319]
  • additional procedures with a user-friendly interface. The model is based on the numerical solution ... partial differential equations describing advection-diffusion and biological processes on a two-dimensional rectangular finite ... elements mesh. The hydraulics and advection-diffusion modules model were validated both with experimental tracer ... good agreement in both cases. Moreover, the model was tested in critical conditions for mass...
  • PoreFlow

  • Referenced in 1 article [sw27330]
  • distributions, and modeling of reactive solute transport accounting for advection and diffusion. The pore space ... Under variably saturated conditions the area of interfaces changes with degree of the fluid saturation ... PoreFlow uses complex formulations for more accurate modeling of transport problems in presence ... variably saturated conditions, to demonstrate the model applicability in hydrogeology problems and petroleum fields...
  • iEBE-VISHNU

  • Referenced in 3 articles [sw22369]
  • model-data comparisons through large scale Monte-Carlo simulations. A numerical interface between the hydrodynamically ... thermal photon radiation is also discussed. This interface is more generally designed for calculations ... energy loss and heavy quark diffusion...
  • NDlib

  • Referenced in 1 article [sw23560]
  • NDlib: a Python Library to Model and Analyze Diffusion Processes Over Complex Networks. Nowadays ... namely NDlib, an environment designed to describe diffusion simulations. NDlib is designed ... online visualization tool that abstracts its programmatic interface and makes available the simulation platform...
  • Morpheus

  • Referenced in 0 articles [sw34557]
  • equations and reaction-diffusion systems. It allows rapid development of multiscale models in biological terms ... rather than programming code. Its graphical user interface supports the entire workflow from model construction...
  • NTMpy

  • Referenced in 1 article [sw31845]
  • combined and optimized to solve coupled heat diffusion equations in one dimension, on arbitrary piecewise ... three-temperature model. The energy source deposited in the material is modelled as a light ... realistic light absorption in presence of scattering interfaces as in multilayer samples. The open source...
  • reactingfoam-SCI

  • Referenced in 1 article [sw29520]
  • stiff chemistry and the oversimplified mixture transport models, etc. In this work, an OpenFOAM ... stiff ODE solver with error control. An interface between OpenFOAM 5.0 and the open source ... numerical calculation results, including those from a diffusion-convection problem, homogeneous ignition delay, shock tube...
  • BEMLIB

  • Referenced in 101 articles [sw00005]
  • BEMLIB is a boundary-element software library of...
  • ADOL-C

  • Referenced in 242 articles [sw00019]
  • ADOL-C: Automatic Differentiation of C/C++. We present...
  • ALBERT

  • Referenced in 82 articles [sw00025]
  • ALBERT - Software for scientific computations and applications. Adaptive...
  • ANSYS

  • Referenced in 663 articles [sw00044]
  • ANSYS offers a comprehensive software suite that spans...
  • ARMS

  • Referenced in 64 articles [sw00048]
  • ARMS: an algebraic recursive multilevel solver for general...
  • BoomerAMG

  • Referenced in 168 articles [sw00086]
  • BoomerAMG: A parallel algebraic multigrid solver and preconditioner...
  • CGAL

  • Referenced in 362 articles [sw00118]
  • The goal of the CGAL Open Source Project...