• gss

  • Referenced in 317 articles [sw06099]
  • data analytical tools discussed in the book are implemented in R, an open-source clone ... book through simulated and real data examples...
  • dclone

  • Referenced in 15 articles [sw23656]
  • package dclone: Data Cloning and MCMC Tools for Maximum Likelihood Methods. Low level functions ... estimating procedures for complex models using data cloning and Bayesian Markov chain Monte Carlo methods...
  • ANOSVA

  • Referenced in 2 articles [sw35536]
  • ANOSVA) to detect alternative splicing from expression data. Since ANOSVA requires no transcript information ... poor. When validated against spiked clone data, it generated no false positives and few false...
  • dcmle

  • Referenced in 1 article [sw41483]
  • dcmle: Hierarchical Models Made Easy with Data Cloning. S4 classes around infrastructure provided ... development easy as a breeze with data cloning for hierarchical models...
  • BioHMM

  • Referenced in 13 articles [sw10920]
  • BioHMM) for segmenting array comparative genomic hybridization data into states with the same underlying copy ... biological factors (e.g. the distance between adjacent clones) in the segmentation process. Availability: BioHMM...
  • MEGAN

  • Referenced in 17 articles [sw33189]
  • MEGAN analysis of metagenomic data. Metagenomics is the study of the genomic content ... complete sequences of environmental fosmid and BAC clones, or environmental assemblies. Emerging sequencing-by-synthesis ... that allows laptop analysis of large metagenomic data sets. In a preprocessing step...
  • SPAdes

  • Referenced in 14 articles [sw17004]
  • bacteria in various environments cannot be cloned in the laboratory and thus cannot be sequenced ... genomics is to complement gene-centric metagenomic data with whole-genome assemblies of uncultivated organisms...
  • BISMA

  • Referenced in 2 articles [sw23507]
  • Fast and accurate bisulfite sequencing data analysis of individual clones from unique and repetitive sequences ... software for analysis of primary bisulfite sequencing data implements sequencing data extraction and enhanced data...
  • QuantumClone

  • Referenced in 0 articles [sw16596]
  • order to recreate putative clones from the data provided. It requires genotype at the location...
  • RePS

  • Referenced in 2 articles [sw17345]
  • identifies exact 20mer repeats from the shotgun data and removes them prior to the assembly ... compute meaningful error probabilities for each base. Clone-end-pairing information is used to construct ... orient the contigs. We show with real data for human and rice that reasonable assemblies...
  • FOUNTAIN

  • Referenced in 1 article [sw21657]
  • sequencing output. The challenges include documentation of clones, templates and sequencing reactions, and the storage ... data storage in a relational database. Starting with a collection of sequencing objects (clones ... scalable software package is presented to facilitate data generation and storage for large sequencing projects...
  • eBURST

  • Referenced in 3 articles [sw35650]
  • Related Bacterial Genotypes from Multilocus Sequence Typing Data. The introduction of multilocus sequence typing (MLST ... model of the way in which bacterial clones emerge and diversify to form clonal complexes ... unable to cope with very large data sets and offer crude graphical outputs. Here...
  • Psignifit

  • Referenced in 1 article [sw27238]
  • data. The toolbox is available as MATLAB code and in addition we provide a clone...
  • Rlab

  • Referenced in 0 articles [sw06020]
  • well as easy data-visualization, and processing. Rlab is not a clone of languages such ... does not try to be a Matlab clone. Instead, it borrows what I believe ... users to create and operate on arbitrary data structures. The fundamental data type...
  • ALIF

  • Referenced in 2 articles [sw26214]
  • sensitivity studies, inverse problems, parameter estimation and data assimilation. Most source-to-source transformation tools ... Land Ice Flow model (ALIF), a C clone of the C++ Ice Sheet System Model ... controls this computation through the setup of data structures, including possible aliasing, as well...
  • subgraph2vec

  • Referenced in 4 articles [sw36496]
  • classifiers such as CNNs, SVMs and relational data clustering algorithms to achieve significantly superior accuracies ... realworld program analysis tasks, namely, code clone and malware detection, subgraph2vec outperforms state...
  • d2_cluster

  • Referenced in 5 articles [sw28788]
  • sequence tags (ESTs) and full-length transcript data on a large scale by means ... genes that have yet to be positionally cloned or obtained directly through genomic sequencing...
  • CLICS

  • Referenced in 1 article [sw29434]
  • CLICS: The CLoning Analysis and Categorization System (CLICS) is a tool developed for the investigation ... methods of exploration to guide users to data relevant to their task. Key features...
  • RClone

  • Referenced in 0 articles [sw15801]
  • GenClone’ (a computer program to analyse genotypic data, test for clonality and describe spatial clonal organization ... wwz.ifremer.fr/clonix/content/download/68205/903914/file/GenClone2.0.setup.zip>), this package allows clone handling as ’GenClone’ does, plus the possibility to work...