• geepack

  • Referenced in 54 articles [sw07119]
  • link, scale link, and correlation link. Can also handle clustered categorical responses...
  • OSCAR

  • Referenced in 58 articles [sw03026]
  • Simultaneous regression shrinkage, variable selection, and supervised clustering of predictors with OSCAR. Variable selection ... large number of predictors with possibly high correlations, such as gene expression data. In this ... method, called OSCAR (octagonal shrinkage and clustering algorithm for regression), is proposed to simultaneously select ... correlated predictors that have a similar effect on the response to form predictive clusters represented...
  • MOLPRO

  • Referenced in 23 articles [sw06125]
  • electron correlation problem through the multiconfiguration-reference CI, coupled cluster ... associated methods. The recently developed explicitly correlated coupled-cluster methods yield CCSD(T) results with ... orders of magnitude. Using local electron correlation methods, which significantly reduce the increase...
  • SUDAAN

  • Referenced in 19 articles [sw06995]
  • complex design features, such as correlated observations, clustering, weighting, and stratification. SUDAAN 11, the newest...
  • spatstat

  • Referenced in 143 articles [sw04429]
  • estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics ... include dependence on covariates, interpoint interaction, cluster formation and dependence on marks. Fitted models...
  • frailtypack

  • Referenced in 44 articles [sw06070]
  • frailty model and Cox proportional hazard model. Clustered and recurrent survival times can be studied ... models for proportional hazard models with two correlated random effects (intercept random effect with random ... slope). 3) Nested frailty models for hierarchically clustered data (with 2 levels of clustering...
  • BotMiner

  • Referenced in 5 articles [sw21748]
  • BotMiner: Clustering analysis of network traffic for protocol-and structure-independent botnet detection. Botnets ... similar or correlated way. Accordingly, our detection framework clusters similar communication traffic ... similar malicious traffic, and performs cross cluster correlation to identify the hosts that share both...
  • N-way Toolbox

  • Referenced in 30 articles [sw12996]
  • congruence and correlation loadings, eemscat for scatter handling of EEM data, clustering for multi...
  • Herwig++

  • Referenced in 43 articles [sw10350]
  • cluster hadronization model. Hadron decays are simulated using matrix elements, where possible including spin correlations...
  • dChipSNP

  • Referenced in 6 articles [sw18745]
  • samples based on LOH profiles and correlating the clustering results to clinical variables. Application...
  • RF++

  • Referenced in 4 articles [sw15909]
  • Forest-based classifier. It can classify cluster-correlated non-independent data in a statistically valid...
  • metafor

  • Referenced in 33 articles [sw12291]
  • forms of clustering). Network meta-analyses and meta-analyses accounting for known correlation structures...
  • GAMESS

  • Referenced in 41 articles [sw03002]
  • from RHF, ROHF, UHF, GVB, and MCSCF. Correlation corrections to these SCF wavefunctions include Configuration ... Interaction, second order perturbation Theory, and Coupled-Cluster approaches, as well as the Density Functional...
  • lava

  • Referenced in 3 articles [sw11263]
  • implemented including robust standard errors for clustered correlated data, multigroup analyses, non-linear parameter constraints...
  • psych

  • Referenced in 45 articles [sw04549]
  • primarily for scale construction using factor analysis, cluster analysis and reliability analysis, although others provide ... using factor analysis of tetrachoric and polychoric correlations. Functions for simulating particular item and test...
  • GEECORR

  • Referenced in 1 article [sw36738]
  • correlated binary responses and within-cluster correlation using generalized estimating equations. A SAS macro, GEECORR ... include additional estimating equations for the pairwise correlation between binary variates. This extension allows ... both the marginal mean and within-cluster correlation as a function of their respective covariate...
  • PyCCE

  • Referenced in 1 article [sw39542]
  • PyCCE: A Python Package for Cluster Correlation Expansion Simulations of Spin Qubit Dynamic. We present ... spin bath, using the cluster-correlation expansion (CCE) method. PyCCE includes modules to generate realistic...
  • DECOR

  • Referenced in 3 articles [sw40609]
  • Clustering based Objective Reduction (DECOR). Correlation distance based clustering of objectives from the approximated Pareto...
  • sjPlot

  • Referenced in 3 articles [sw16141]
  • models, mixed effects models, PCA and correlation matrices, cluster analyses, scatter plots, Likert scales, effects...