• CNV-seq

  • Referenced in 11 articles [sw17970]
  • CNV-seq: a new method to detect copy number variation using ... high-throughput sequencing. Background: DNA copy number variation (CNV) has been recognized as an important ... commonly used for CNV detection, but the microarray platform has a number of inherent limitations ... method to detect copy number variation using shotgun sequencing, CNV-seq. The method is based...
  • FLLat

  • Referenced in 2 articles [sw19127]
  • identify the regions of copy number variation (CNV) and to quantify the amount ... sample aCGH data and identifying regions of CNV. The procedure involves modeling each sample ... fixed number of features. Regions of CNV are then identified through an application ... that FLLat and Significance Testing of Aberrant Copy number (an alternative, existing approach) identify similar...
  • Acgh.spline

  • Referenced in 1 article [sw18847]
  • ability to detect accurately both copy number variation (CNV) and copy number alterations...
  • PennCNV

  • Referenced in 16 articles [sw19390]
  • copy number variations (CNVs) is required to provide a complete view of human genetic variation ... resolution of CNV detection in previous experimental designs has been limited to tens or hundreds...
  • SegCorr

  • Referenced in 1 article [sw21050]
  • role of mechanisms such as copy number variation (CNV) or epigenetic alterations as factors that ... corrected for correlations possibly caused by copy number variation. The correction permitted the detection...
  • ExomeCNV

  • Referenced in 1 article [sw35179]
  • Motivation: The ability to detect copy-number variation (CNV) and loss of heterozygosity (LOH) from...
  • R

  • Referenced in 8601 articles [sw00771]
  • R is a language and environment for statistical...
  • Bioconductor

  • Referenced in 305 articles [sw04205]
  • Bioconductor provides tools for the analysis and comprehension...
  • edgeR

  • Referenced in 48 articles [sw06936]
  • edgeR: a Bioconductor package for differential expression analysis...
  • DEseq

  • Referenced in 51 articles [sw10344]
  • DESeq: Differential gene expression analysis based on the...
  • BioHMM

  • Referenced in 13 articles [sw10920]
  • BioHMM: a heterogeneous hidden Markov model for segmenting...
  • seqCBS

  • Referenced in 6 articles [sw12152]
  • seqCBS: CN Profiling using Sequencing and CBS. This...
  • rSW-seq

  • Referenced in 3 articles [sw17971]
  • rSW-seq: algorithm for detection of copy number...
  • PLASQ

  • Referenced in 6 articles [sw18746]
  • PLASQ: A generalized linear model-based procedure to...
  • PICNIC

  • Referenced in 6 articles [sw20386]
  • PICNIC: an algorithm to predict absolute allelic copy...
  • CARAT

  • Referenced in 6 articles [sw35399]
  • CARAT: A novel method for allelic detection of...