• Mauve

  • Referenced in 16 articles [sw24606]
  • Mauve: multiple alignment of conserved genomic sequence with rearrangements. As genomes evolve, they undergo large ... sequences into bacterial chromosomes, and deletions remove segments of the genome. Consequently, each genome ... subset of other genomes and segments conserved among all the genomes under consideration. Furthermore ... segments may be shuffled among genomes. We present methods for identification and alignment of conserved...
  • PipMaker

  • Referenced in 8 articles [sw17257]
  • long DNA sequences to identify conserved segments and for producing informative, high-resolution displays ... plot of the locations of those segments in both species (similar to a dot plot ... regulatory elements) depend on the level of conservation and the time and divergence rate since...
  • SEGID

  • Referenced in 9 articles [sw35743]
  • Interesting Segments in (Multiple) Sequence Alignments. Summary: SEGID is a tool for finding conserved regions...
  • IC-Finder

  • Referenced in 1 article [sw40382]
  • have emphasized the segmentation of genomes into interaction compartments that constitute conserved functional domains participating ... human, we show how the predicted segmentation may depend on the normalization scheme...
  • DYANA

  • Referenced in 11 articles [sw08628]
  • Antennapedia (C39S) homeodomain, which comprises unstructured polypeptide segments at the two chain termini ... linear momenta of the system are conserved and periodically reset to zero...
  • Clustal

  • Referenced in 1 article [sw08312]
  • colouring scheme allows the user to highlight conserved features in the alignment. Pull-down menus ... analysis can be performed and low-scoring segments or exceptional residues can be highlighted. Quality...
  • ADOL-C

  • Referenced in 247 articles [sw00019]
  • ADOL-C: Automatic Differentiation of C/C++. We present...
  • ANSYS

  • Referenced in 685 articles [sw00044]
  • ANSYS offers a comprehensive software suite that spans...
  • Coq

  • Referenced in 1856 articles [sw00161]
  • Coq is a formal proof management system. It...
  • Gmsh

  • Referenced in 690 articles [sw00366]
  • Gmsh is a 3D finite element grid generator...
  • Macaulay2

  • Referenced in 1841 articles [sw00537]
  • Macaulay2 is a software system devoted to supporting...
  • Mathematica

  • Referenced in 6235 articles [sw00554]
  • Almost any workflow involves computing results, and that...
  • Matlab

  • Referenced in 13100 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • Octave

  • Referenced in 304 articles [sw00646]
  • GNU Octave is a high-level language, primarily...
  • PPM

  • Referenced in 63 articles [sw00728]
  • PPM -- a highly efficient parallel particle-mesh library...
  • R

  • Referenced in 9188 articles [sw00771]
  • R is a language and environment for statistical...
  • SageMath

  • Referenced in 1859 articles [sw00825]
  • Sage (SageMath) is free, open-source math software...
  • SuperLU

  • Referenced in 186 articles [sw00930]
  • SuperLU is a general purpose library for the...
  • UMFPACK

  • Referenced in 393 articles [sw00989]
  • An ANSI C code for sparse LU factorization...
  • XFEM

  • Referenced in 377 articles [sw01026]
  • An extended finite element library. This paper presents...