• MEGAN

  • Referenced in 17 articles [sw33189]
  • explore the taxonomical content of the data set, employing the NCBI taxonomy to summarize ... taxonomical level of the assigned taxon reflects the level of conservation of the sequence...
  • multiUQ

  • Referenced in 2 articles [sw36935]
  • liquid flows which include a stochastic conservative level set method to capture the location...
  • FELSOS

  • Referenced in 25 articles [sw18095]
  • compared to the standard, finite difference level-set realizations. In particular, the use of finite ... interface normal, curvature and mass conservation. The operator-splitting makes it possible to separate...
  • ECHO

  • Referenced in 29 articles [sw22269]
  • shock-capturing conservative method able to work at an arbitrary level of formal accuracy ... Eulerian formalism, allowing for different sets of equations, different algorithms, and working in a generic...
  • MOUSE

  • Referenced in 2 articles [sw04300]
  • attention is drawn to the classical level-set method, i.e., accuracy issues and topological restrictions ... volume solution package MOUSE for systems of conservation laws on arbitrary grids...
  • Coquelicot

  • Referenced in 13 articles [sw11552]
  • process, the library comes with a comprehensive set of theorems that cover not only these ... performing differentiability proofs. Moreover, Coquelicot is a conservative extension of Coq’s standard library ... cases: in an exam at university entry level, for the definitions and properties of Bessel...
  • SUSY_FLAVOR

  • Referenced in 9 articles [sw09547]
  • general R-parity conserving MSSM. For a set of input MSSM parameters, the code gives ... these quantities are calculated at one-loop level (with some higher-order QCD corrections included...
  • CYNTENATOR

  • Referenced in 1 article [sw29670]
  • identify genomic regions of conserved synteny over a large set of diverging species. CYNTENATOR does ... depend on nucleotide-level alignments and a priori homology assignment. Our software implements an improved...
  • NetworkBLAST

  • Referenced in 2 articles [sw34157]
  • species analysis allows coping with the high levels of noise that are typical to these ... NetworkBLAST outputs a set of putative complexes that are evolutionarily conserved across the two networks...
  • SNPs3D

  • Referenced in 5 articles [sw30035]
  • possible on disease/gene relationships at the molecular level. Description: The resource http://www.SNPs3D.org has three ... module provides information about the relationships between sets of candidate genes. The third module analyzes ... stability, the other based on sequence conservation. Entries for each gene include a number...
  • ConFunc

  • Referenced in 2 articles [sw35349]
  • alignments according to their GO annotations. Conserved residues are identified for each GO term ... generated. This combination of steps produces a set of feature (GO annotation) derived profiles from ... ConFunc significantly outperforms BLAST & PSI-BLAST obtaining levels of recall and precision that...
  • ANSYS

  • Referenced in 713 articles [sw00044]
  • ANSYS offers a comprehensive software suite that spans...
  • ATLAS

  • Referenced in 199 articles [sw00056]
  • This paper describes the Automatically Tuned Linear Algebra...
  • BARON

  • Referenced in 361 articles [sw00066]
  • BARON is a computational system for solving nonconvex...
  • BoomerAMG

  • Referenced in 200 articles [sw00086]
  • BoomerAMG: A parallel algebraic multigrid solver and preconditioner...
  • Coq

  • Referenced in 1906 articles [sw00161]
  • Coq is a formal proof management system. It...
  • FUM

  • Referenced in 2 articles [sw00310]
  • FUM---an efficient MmB solver for steady inviscid...
  • GeM

  • Referenced in 100 articles [sw00332]
  • We present a recently developed Maple-based “GeM...
  • Gerris

  • Referenced in 354 articles [sw00341]
  • Gerris is a Free Software program for the...