
SVMlight
 Referenced in 268 articles
[sw04076]
 both error rate and precision/recall. XiAlphaestimates [Joachims, 2002a, Joachims, 2000b] can be computed ... computational expense, but they are conservatively biased. Almost unbiased estimates provides leaveoneout testing...

HLLE
 Referenced in 695 articles
[sw06605]
 based on the integral form of the conservation laws and the largest and smallest signal ... restores the missing Rarefaction wave by some estimates, like linearisations, these can be simple...

qvalue
 Referenced in 8 articles
[sw22383]
 simultaneous testing of many hypotheses and estimates their qvalues and local FDR values ... recently been shown on the conservative accuracy of the estimated qvalues from this software...

AsturFit
 Referenced in 2 articles
[sw36394]
 static curve. The method provides a conservative estimation of the error bars associated...

Gibbs2
 Referenced in 2 articles
[sw08904]
 curve. The method provides a conservative estimation of the error bars associated to the fitting...

colcor
 Referenced in 5 articles
[sw12289]
 determine the bias and variance of FDR estimates. Efron (2009b) has shown that ... column dependence, and give a conservative (upwardly biased) estimator for the meansquared row correlation...

depimpact
 Referenced in 1 article
[sw36729]
 impact: A python package for conservative estimation of an output quantity of interest in reliabilty ... input variables. The class can therefore estimates, through a MonteCarlo sampling, a quantity ... distribution. It can also give a conservative estimation of the output quantity by determining...

ConSurf
 Referenced in 5 articles
[sw35754]
 known three dimensional structure by estimating the degree of conservation of the aminoacid sites...

AL2CO
 Referenced in 3 articles
[sw35905]
 developed a program to calculate a conservation index at each position in a multiple sequence ... frequencies at each position are estimated and the conservation index is calculated from these frequencies...

COMVIS
 Referenced in 2 articles
[sw02316]
 reconstruction of the observed scene and to estimate the reconstruction errors. The integration is achieved ... grade of correlation and still guarantee conservative error estimates. Tests on real and synthetic scene...

sydSeq
 Referenced in 1 article
[sw25399]
 questions about the inner workings of cells. Estimating changes in the overall transcription ... exons which are consistently conserved after splicing— offers an unbiased estimation of the overall transcription ... based method, exClust, for estimating the exons that are consistently conserved after splicing ... method is shown to produce robust estimates of overall gene transcription...

DINGO
 Referenced in 4 articles
[sw29317]
 estimated from separate groupspecific data and without due consideration of relationships that are conserved ... network analysis in genomics (DINGO) model for estimating groupspecific networks and making inference...

BioProspector
 Referenced in 29 articles
[sw09375]
 BioProspector: discovering conserved DNA motifs in upstream regulatory regions of coexpressed genes. The development ... Markov background model are either estimated from userspecified sequences or precomputed from...

qLearn
 Referenced in 20 articles
[sw11117]
 covariate history. A common method for estimating an optimal dynamic treatment regime from data ... method delivers nominal coverage while being less conservative than alternatives. The proposed methods are implemented...

ConSeq
 Referenced in 4 articles
[sw35647]
 most likely to be solventaccessible, whereas conserved residues within the protein core most probably ... maintaining the protein’s fold. Thus, estimated evolutionary rates, as well as relative solvent accessibility...

marelac
 Referenced in 0 articles
[sw15176]
 physical functions, e.g. to estimate concentrations of conservative substances, gas transfer and diffusion coefficients...

HubAlign
 Referenced in 3 articles
[sw34150]
 network usually are much more conserved and thus, more likely to be aligned. HubAlign uses ... minimumdegree heuristic algorithm to estimate the topological and functional importance of a protein from...

pyhrt
 Referenced in 2 articles
[sw42388]
 conservative) pvalue to each feature. The pvalue corresponds to an estimate...

MEGAN
 Referenced in 17 articles
[sw33189]
 content of such a sample is usually estimated by comparison against sequence databases of known ... assigned taxon reflects the level of conservation of the sequence. The software allows large data...

SEAVIEW
 Referenced in 4 articles
[sw22985]
 usual methods (neighbor joining with numerous distance estimates, maximum parsimony, maximum likelihood), and a bootstrap ... criteria. Taxonomic species groups and sets of conserved regions can be defined by mouse...