• SVMlight

  • Referenced in 268 articles [sw04076]
  • both error rate and precision/recall. XiAlpha-estimates [Joachims, 2002a, Joachims, 2000b] can be computed ... computational expense, but they are conservatively biased. Almost unbiased estimates provides leave-one-out testing...
  • HLLE

  • Referenced in 695 articles [sw06605]
  • based on the integral form of the conservation laws and the largest and smallest signal ... restores the missing Rarefaction wave by some estimates, like linearisations, these can be simple...
  • qvalue

  • Referenced in 8 articles [sw22383]
  • simultaneous testing of many hypotheses and estimates their q-values and local FDR values ... recently been shown on the conservative accuracy of the estimated q-values from this software...
  • AsturFit

  • Referenced in 2 articles [sw36394]
  • static curve. The method provides a conservative estimation of the error bars associated...
  • Gibbs2

  • Referenced in 2 articles [sw08904]
  • curve. The method provides a conservative estimation of the error bars associated to the fitting...
  • colcor

  • Referenced in 5 articles [sw12289]
  • determine the bias and variance of FDR estimates. Efron (2009b) has shown that ... column dependence, and give a conservative (upwardly biased) estimator for the mean-squared row correlation...
  • dep-impact

  • Referenced in 1 article [sw36729]
  • impact: A python package for conservative estimation of an output quantity of interest in reliabilty ... input variables. The class can therefore estimates, through a Monte-Carlo sampling, a quantity ... distribution. It can also give a conservative estimation of the output quantity by determining...
  • ConSurf

  • Referenced in 5 articles [sw35754]
  • known three dimensional structure by estimating the degree of conservation of the amino-acid sites...
  • AL2CO

  • Referenced in 3 articles [sw35905]
  • developed a program to calculate a conservation index at each position in a multiple sequence ... frequencies at each position are estimated and the conservation index is calculated from these frequencies...
  • COMVIS

  • Referenced in 2 articles [sw02316]
  • reconstruction of the observed scene and to estimate the reconstruction errors. The integration is achieved ... grade of correlation and still guarantee conservative error estimates. Tests on real and synthetic scene...
  • sydSeq

  • Referenced in 1 article [sw25399]
  • questions about the inner workings of cells. Estimating changes in the overall transcription ... exons which are consistently conserved after splicing— offers an unbiased estimation of the overall transcription ... based method, exClust, for estimating the exons that are consistently conserved after splicing ... method is shown to produce robust estimates of overall gene transcription...
  • DINGO

  • Referenced in 4 articles [sw29317]
  • estimated from separate group-specific data and without due consideration of relationships that are conserved ... network analysis in genomics (DINGO) model for estimating group-specific networks and making inference...
  • BioProspector

  • Referenced in 29 articles [sw09375]
  • BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes. The development ... Markov background model are either estimated from user-specified sequences or pre-computed from...
  • qLearn

  • Referenced in 20 articles [sw11117]
  • covariate history. A common method for estimating an optimal dynamic treatment regime from data ... method delivers nominal coverage while being less conservative than alternatives. The proposed methods are implemented...
  • ConSeq

  • Referenced in 4 articles [sw35647]
  • most likely to be solvent-accessible, whereas conserved residues within the protein core most probably ... maintaining the protein’s fold. Thus, estimated evolutionary rates, as well as relative solvent accessibility...
  • marelac

  • Referenced in 0 articles [sw15176]
  • physical functions, e.g. to estimate concentrations of conservative substances, gas transfer and diffusion coefficients...
  • HubAlign

  • Referenced in 3 articles [sw34150]
  • network usually are much more conserved and thus, more likely to be aligned. HubAlign uses ... minimum-degree heuristic algorithm to estimate the topological and functional importance of a protein from...
  • pyhrt

  • Referenced in 2 articles [sw42388]
  • conservative) p-value to each feature. The p-value corresponds to an estimate...
  • MEGAN

  • Referenced in 17 articles [sw33189]
  • content of such a sample is usually estimated by comparison against sequence databases of known ... assigned taxon reflects the level of conservation of the sequence. The software allows large data...
  • SEAVIEW

  • Referenced in 4 articles [sw22985]
  • usual methods (neighbor joining with numerous distance estimates, maximum parsimony, maximum likelihood), and a bootstrap ... criteria. Taxonomic species groups and sets of conserved regions can be defined by mouse...