• repDNA

  • Referenced in 12 articles [sw16473]
  • first group calculates three nucleic acid composition features describing the local sequence information by means ... kmers; the second group calculates six autocorrelation features describing the level of correlation between ... third group calculates six pseudo nucleotide composition features, which can be used to represent...
  • propy

  • Referenced in 27 articles [sw22402]
  • feature groups composed of 13 features, including amino acid composition, dipeptide composition, tripeptide composition, normalized ... types of pseudo amino acid composition (PseAAC) descriptors. These features could be generally regarded...
  • SLIC

  • Referenced in 163 articles [sw18282]
  • characterized by the following features: (1) Fluid surfaces are represented locally for each mixed- fluid ... these surfaces are defined as a composition of one space dimensional components, one for each...
  • iRSpot-PseDNC

  • Referenced in 65 articles [sw22437]
  • PseDNC: identify recombination spots with pseudo dinucleotide composition. Meiotic recombination is an important biological process ... novel feature vector, the so-called ’pseudo dinucleotide composition’ (PseDNC), into which six local...
  • iPro54-PseKNC

  • Referenced in 32 articles [sw22411]
  • prokaryote with pseudo k-tuple nucleotide composition. The σ(54) promoters are unique in prokaryotic ... novel feature vector called ’pseudo k-tuple nucleotide composition’, which was further optimized...
  • PicToSeek

  • Referenced in 36 articles [sw14897]
  • invariants into a unified high-dimensional invariant feature set for discriminatory object retrieval. Experiments have ... object retrieval based on composite color and shape invariant features provides excellent retrieval accuracy. Object...
  • SAMRAI

  • Referenced in 50 articles [sw04441]
  • emphasize two important features of our design. First, we describe the composition of complex numerical...
  • ESLpred

  • Referenced in 20 articles [sw22403]
  • methods are based on either amino acid composition or N-terminal characteristics of the proteins ... proteins from their different features such as amino acid composition, dipeptide composition and physico-chemical ... modules based on amino acid composition or physico-chemical properties. In addition, PSI-BLAST ... developed a hybrid module using all features of a protein, which consisted of an input...
  • Bio-PEPA

  • Referenced in 108 articles [sw01361]
  • computer systems, in order to handle some features of biological models, suchas stoichiometry ... seen as an intermediate, formal, compositional representation of biological systems, on which different kindsof analysis...
  • iCTX-Type

  • Referenced in 21 articles [sw22440]
  • dimensional) general pseudoamino acid composition, followed by the feature optimization procedure to reduce the sample...
  • EasyLocal++

  • Referenced in 39 articles [sw04104]
  • essential features of most local search metaheuristics, and their possible compositions. This allows the user...
  • Ruby

  • Referenced in 34 articles [sw16267]
  • various elaborate features of Ruby can be cleanly represented as a composition of two orthogonal...
  • iNuc-PseKNC

  • Referenced in 31 articles [sw16607]
  • genomes with pseudo k-tuple nucleotide composition. Motivation: Nucleosome positioning participates in many cellular activities ... novel feature-vector called ‘pseudo k-tuple nucleotide composition’, into which six DNA local structural...
  • ABS

  • Referenced in 31 articles [sw21211]
  • This feature combination results in a concurrent object-oriented model which is inherently compositional ... Core ABS, a calculus with the main features of ABS. For Core ABS, we prove...
  • PROFEAT

  • Referenced in 14 articles [sw16924]
  • descriptor values. The computed features include amino acid composition, dipeptide composition, normalized Moreau–Broto autocorrelation ... number, quasi-sequence-order descriptors and the composition, transition and distribution of various structural ... were extensively tested and the computed protein features have been used in a number...
  • SecretP

  • Referenced in 14 articles [sw22470]
  • fusing new features into Chou’s pseudo-amino acid composition. Protein secretion plays an important ... fusing several new features into Chou’s pseudo-amino acid composition (PseAAC), two support vector...
  • iSS-PseDNC

  • Referenced in 16 articles [sw22438]
  • PseDNC: identifying splicing sites using pseudo dinucleotide composition. In eukaryotic genes, exons are generally interrupted ... formulated by a novel feature-vector called ”pseudo dinucleotide composition” (PseDNC) into which...
  • iEzy-drug

  • Referenced in 15 articles [sw22455]
  • amino acid composition generated via incorporating sequential evolution information and physicochemical features derived from...
  • PseDNA-Pro

  • Referenced in 6 articles [sw22424]
  • kinds of sequence-based features, including overall amino acid composition, pseudo amino acid composition (PseAAC ... physicochemical distance transformation. These features not only consider the sequence composition of proteins, but also ... information of amino acids in proteins. The feature vectors were fed into Support Vector Machine...
  • iRNA-PseColl

  • Referenced in 31 articles [sw24441]
  • collective features of the sequence elements into the general pseudo K-tuple nucleotide composition (PseKNC...