• EpiModel

• Referenced in 11 articles [sw16142]
• disease. Epidemic model classes include deterministic compartmental models, stochastic agent-based models, and stochastic network...

• EoN

• Referenced in 6 articles [sw31396]
• models; effective degree models; edge-based compartmental models...

• MLAB

• Referenced in 5 articles [sw06010]
• problems such as chemical kinetics, pharmacological compartmental models, multiple site ligand binding, neurophysiological modeling...

• Virtual Cell

• Referenced in 9 articles [sw22589]
• construction of cell biological models and the generation of simulations from them. The system ... enables the formulation of both compartmental and spatial models, the latter with either idealized...

• BioSpaun

• Referenced in 1 article [sw39675]
• model that includes detailed, conductance-based, compartmental models of individual neurons. We call the model ... demonstrate that including these detailed compartmental models does not adversely affect performance across a variety...

• libspatialSEIR

• Referenced in 3 articles [sw23189]
• fitting Bayesian spatial SEIR and SEIRS compartmental epidemic models. The numerical heavy lifting...

• epipack

• Referenced in 1 article [sw37960]
• disease modeling package for Python. Simple compartmental models of infectious diseases are useful to investigate...

• Eir

• Referenced in 1 article [sw39005]
• stochastic simulations of epidemics, primarily using spatial models. With this software, one can simulate ... user, containing many more compartmental models that is present in any of the existing packages...

• Surf-Hippo

• Referenced in 1 article [sw37102]
• simulation of biophysically and anatomically detailed compartmental models of single neurons and networks of neurons...

• PkStaMp

• Referenced in 2 articles [sw06760]
• optimal design theory for nonlinear mixed effects models and, in particular, on the first-order ... number of popular compartmental PK and combined PK/PD models and can be extended to include...

• SGN Sim

• Referenced in 8 articles [sw29325]
• well. As examples, we present a model of a toggle switch without cooperative binding subject ... perturbations, a system of reactions within a compartmentalized environment where membrane crossing is controlled...

• RxODE

• Referenced in 0 articles [sw19432]
• models, such as pharmacometrics and other compartmental models. A compilation manager translates the ODE model...

• von Bertalanffy

• Referenced in 1 article [sw21891]
• flux balance analysis of genome scale stoichiometric models of metabolism, the principal constraints are uptake ... reaction directionality in multi-compartmental genome scale models based on an application of the second...

• EpiILMCT

• Referenced in 3 articles [sw31969]
• SINR) compartmental frameworks. An overview of the implemented continuous-time individual level models for epidemics...

• PKSolver

• Referenced in 1 article [sw27401]
• including noncompartmental analysis (NCA), compartmental analysis (CA), and pharmacodynamic modeling. Two special built-in modules...

• ncappc

• Referenced in 0 articles [sw18957]
• diagnostic tool for population models using non-compartmental analysis: The ncappc package for R. Background ... objective: Non-compartmental analysis (NCA) calculates pharmacokinetic (PK) metrics related to the systemic exposure ... checks (ppc) for a population PK (PopPK) model using NCA metrics. Methods: The nca feature...

• Compartor

• Referenced in 1 article [sw41452]
• compartmentalized system. Through the moment equation method, Compartor renders the analysis of stochastic population models...

• vaCATE

• Referenced in 1 article [sw27398]
• Here we present vaCATE (Visualized Automation of Compartmental Analysis by Tracer Efflux), a software package ... extracted, using a three-compartment model and a curve-stripping procedure to distinguish them ... used in most situations where compartmental analysis is required...

• SGNS2

• Referenced in 2 articles [sw34966]
• SGNS2: a compartmentalized stochastic chemical kinetics simulator for dynamic cell populations. Motivation: Cell growth ... basis. We exemplify its use with six models including a stochastic model of the disposal...

• BreakApp

• Referenced in 1 article [sw35853]
• exploits module boundaries to automate security-oriented compartmentalization of legacy applications and enforce security policies ... security and performance based on changing threat models or load patterns. Experimental results demonstrate feasibility...