• BioHMM

  • Referenced in 13 articles [sw10920]
  • method (BioHMM) for segmenting array comparative genomic hybridization data into states with the same underlying...
  • CNV-seq

  • Referenced in 11 articles [sw17970]
  • important source of genetic variation. Array comparative genomic hybridization (aCGH) is commonly used...
  • cghseg

  • Referenced in 4 articles [sw06783]
  • profiles The statistical analysis of array comparative genomic hybridization (CGH) data has now shifted ... joint segmentation, normalization, and calling for multiple array CGH profiles. This model shows great flexibility...
  • CGHclassify

  • Referenced in 4 articles [sw17253]
  • Array-based comparative genomic hybridization (aCGH). aCGH Clone Classification R Software...
  • CGHMultiArray

  • Referenced in 1 article [sw35534]
  • exact P-values for multi-array comparative genomic hybridization data. We compute P-values, based ... compare two conditions with array comparative genomic hybridization data, and we provide a simple interface...
  • CGHnormaliter

  • Referenced in 1 article [sw19117]
  • aberrations. Normalization and centralization of array comparative genomic hybridization (aCGH) data. The algorithm uses...
  • FLLat

  • Referenced in 2 articles [sw19127]
  • analyzing multi-sample aCGH data. Array-based comparative genomic hybridization (aCGH) enables the measurement...
  • CGH-Explorer

  • Referenced in 1 article [sw35543]
  • Explorer: a program for analysis of array-CGH data. Summary: CGH-Explorer is a program ... statistical analysis of microarray-based comparative genomic hybridization (array-CGH) data. The program has preprocessing...
  • Acgh.spline

  • Referenced in 1 article [sw18847]
  • Motivation: The careful normalization of array-based comparative genomic hybridization (aCGH) data is of critical...
  • Circos

  • Referenced in 4 articles [sw27740]
  • Circos: an information aesthetic for comparative genomics. We created a visualization tool called Circos ... comparisons of genomes. Our tool is effective in displaying variation in genome structure and, generally ... between genomic intervals. Such data are routinely produced by sequence alignments, hybridization arrays, genome mapping...
  • LAPACK

  • Referenced in 1642 articles [sw00503]
  • LAPACK is written in Fortran 90 and provides...
  • Magma

  • Referenced in 2917 articles [sw00540]
  • Computer algebra system (CAS). Magma is a large...
  • Maple

  • Referenced in 5124 articles [sw00545]
  • The result of over 30 years of cutting...
  • Mathematica

  • Referenced in 5957 articles [sw00554]
  • Almost any workflow involves computing results, and that...
  • Matlab

  • Referenced in 12309 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • PSwarm

  • Referenced in 62 articles [sw00742]
  • PSwarm: a hybrid solver for linearly constrained global...
  • R

  • Referenced in 8601 articles [sw00771]
  • R is a language and environment for statistical...
  • SageMath

  • Referenced in 1675 articles [sw00825]
  • Sage (SageMath) is free, open-source math software...
  • LIBSVM

  • Referenced in 1101 articles [sw04879]
  • LIBSVM is a library for Support Vector Machines...
  • SAS

  • Referenced in 1507 articles [sw06377]
  • SAS (Statistical Analysis System) is an integrated system...