
BioHMM
 Referenced in 13 articles
[sw10920]
 method (BioHMM) for segmenting array comparative genomic hybridization data into states with the same underlying...

CNVseq
 Referenced in 11 articles
[sw17970]
 important source of genetic variation. Array comparative genomic hybridization (aCGH) is commonly used...

cghseg
 Referenced in 4 articles
[sw06783]
 profiles The statistical analysis of array comparative genomic hybridization (CGH) data has now shifted ... joint segmentation, normalization, and calling for multiple array CGH profiles. This model shows great flexibility...

CGHclassify
 Referenced in 4 articles
[sw17253]
 Arraybased comparative genomic hybridization (aCGH). aCGH Clone Classification R Software...

CGHMultiArray
 Referenced in 1 article
[sw35534]
 exact Pvalues for multiarray comparative genomic hybridization data. We compute Pvalues, based ... compare two conditions with array comparative genomic hybridization data, and we provide a simple interface...

CGHnormaliter
 Referenced in 1 article
[sw19117]
 aberrations. Normalization and centralization of array comparative genomic hybridization (aCGH) data. The algorithm uses...

FLLat
 Referenced in 2 articles
[sw19127]
 analyzing multisample aCGH data. Arraybased comparative genomic hybridization (aCGH) enables the measurement...

CGHExplorer
 Referenced in 1 article
[sw35543]
 Explorer: a program for analysis of arrayCGH data. Summary: CGHExplorer is a program ... statistical analysis of microarraybased comparative genomic hybridization (arrayCGH) data. The program has preprocessing...

Acgh.spline
 Referenced in 1 article
[sw18847]
 Motivation: The careful normalization of arraybased comparative genomic hybridization (aCGH) data is of critical...

Circos
 Referenced in 4 articles
[sw27740]
 Circos: an information aesthetic for comparative genomics. We created a visualization tool called Circos ... comparisons of genomes. Our tool is effective in displaying variation in genome structure and, generally ... between genomic intervals. Such data are routinely produced by sequence alignments, hybridization arrays, genome mapping...

LAPACK
 Referenced in 1642 articles
[sw00503]
 LAPACK is written in Fortran 90 and provides...

Magma
 Referenced in 2917 articles
[sw00540]
 Computer algebra system (CAS). Magma is a large...

Maple
 Referenced in 5124 articles
[sw00545]
 The result of over 30 years of cutting...

Mathematica
 Referenced in 5957 articles
[sw00554]
 Almost any workflow involves computing results, and that...

Matlab
 Referenced in 12309 articles
[sw00558]
 MATLAB® is a highlevel language and interactive...

PSwarm
 Referenced in 62 articles
[sw00742]
 PSwarm: a hybrid solver for linearly constrained global...

R
 Referenced in 8601 articles
[sw00771]
 R is a language and environment for statistical...

SageMath
 Referenced in 1675 articles
[sw00825]
 Sage (SageMath) is free, opensource math software...

LIBSVM
 Referenced in 1101 articles
[sw04879]
 LIBSVM is a library for Support Vector Machines...

SAS
 Referenced in 1507 articles
[sw06377]
 SAS (Statistical Analysis System) is an integrated system...