• SPAdes

  • Referenced in 14 articles [sw17004]
  • genome assemblies of uncultivated organisms. Assembly of single-cell data is challenging because of highly ... describe SPAdes, a new assembler for both single-cell and standard (multicell) assembly, and demonstrate ... recently released E+V−SC assembler (specialized for single-cell data) and on popular assemblers ... multicell data). SPAdes generates single-cell assemblies, providing information about genomes of uncultivatable bacteria that...
  • CoCoNAD

  • Referenced in 3 articles [sw40294]
  • CoCoNAD (Continuous-time Closed Neuron Assembly Detection) is a program to find frequent imprecisely synchronous ... groups of neurons, sometimes called cell assemblies. The Python implementation is much slower (by about...
  • L-VIBRA

  • Referenced in 3 articles [sw02429]
  • manipulator working in an assembly cell. Since RL requires a large amount of learning trials...
  • SUGGAR

  • Referenced in 16 articles [sw08883]
  • AssembleR (SUGGAR) code is an overset grid assembly program designed for moving body simulations that ... and/or general polyhedral grids for node and cell centered flow solvers...
  • ExSPAnder

  • Referenced in 1 article [sw13527]
  • recently emerged single-cell sequencing projects. While various NGS assemblers can use information from several ... most assemblers assume uniform read coverage, condition that does not hold for single-cell projects ... pairs in both standard and single-cell assembly projects. Availability and implementation: http://bioinf.spbau.ru/en/spades...
  • WorkStream

  • Referenced in 10 articles [sw26345]
  • needs to be done independently on every cell, followed by a reduction of these local ... global data structure. For example, matrix assembly, estimating discretization errors, or converting nodal values into...
  • SEQuel

  • Referenced in 2 articles [sw16992]
  • substitusion erros in assemblies of both standard (multi-cell) and single-cell sequencing data. SEQuel ... sequence data, in combination with multiple NGS assemblers, such as Euler-SR, Velvet, SoapDeNovo, ALLPATHS...
  • GOLD

  • Referenced in 6 articles [sw23027]
  • Sequencing Projects (such as isolate genome, single-cell genome, metagenome, metatranscriptome) and complex Analysis Projects ... such as genome from metagenome, or combined assembly from multiple Sequencing Projects). GOLD provides...
  • MDK

  • Referenced in 4 articles [sw31876]
  • real counterparts, the MIX features registers, memory cells, an overflow toggle, comparison flags, input-output ... program the MIX using an assembly language called MIXAL, the MIX Assembly Language...
  • FEMPAR

  • Referenced in 21 articles [sw21297]
  • unfitted finite element techniques on cut cells, combined with h-adaptivity. The linear solver module ... also provide some ingredients about the assembly of linear systems arising from finite element discretizations...
  • UpGene

  • Referenced in 3 articles [sw17355]
  • level expression of HIV genes in mammalian cells, which is due primarily to the instability ... algorithm combination, together with PCR-based gene assembly, we have successfully optimized gene sequences ... high-level gene expression in eukaryotic cells. Our findings demonstrate that our user-friendly algorithm...
  • SHELXT

  • Referenced in 1 article [sw15296]
  • assembled to maximize its connectivity and centred optimally in the unit cell. SHELXT has already...
  • MPM3DMP

  • Referenced in 8 articles [sw19366]
  • extension of particle-in-cell method to solid mechanics. A parallel MPM code is developed ... threads, the auxiliary arrays are assembled to establish the global nodal array. In the domain...
  • AdeptRAPID

  • Referenced in 2 articles [sw01577]
  • design and simulate robot-based flexible automation cells. Its goal is to simplify the concepting ... installations used for applications such as mechanical assembly, material handling, or packaging. The need...
  • ScalaBLAST

  • Referenced in 7 articles [sw08812]
  • molecules that do most of a cell’s work. A typical bacterial genome contains ... genetic code, making it possible to assemble a ”tree of life” by comparing new sequences...
  • HELIOS

  • Referenced in 1 article [sw19398]
  • depletion calculations of the fast reactor cell with HELIOS 1.10. he article presents advanced application ... where the VVER-440 and SUPERPHENIX fuel assemblies were modelled and compared. The French fast ... connected with spatial discretization of the model cells. It shows a very high influence ... relevant SUPERPHENIX and VVER-440 fuel assemblies situated hypothetically into the infinite lattice with...
  • IFE-PIC

  • Referenced in 6 articles [sw20572]
  • number of simulation particles. The Particle-in-Cell (PIC) method is one of the major ... parameters for plasma properties is also assembled into a single input file which...
  • GRINS

  • Referenced in 6 articles [sw21301]
  • unfitted finite element techniques on cut cells, combined with h-adaptivity. The linear solver module ... also provide some ingredients about the assembly of linear systems arising from finite element discretizations...
  • AutoNet

  • Referenced in 1 article [sw30811]
  • normal functioning of the human cell, it also presents many opportunities for the onset ... nuclear ribonucleoprotein (snRNP) particles through a complex assembly. Each gene-exon is regulated ... wide SRN was constructed for normal human cells and an assessment of the reliability...
  • PolySearch

  • Referenced in 1 article [sw16755]
  • diseases, tissues, cell compartments, gene/protein names, SNPs, mutations, drugs and metabolites. PolySearch also exploits ... gene identification using a variety of manually assembled ‘gold standard’ text corpuses. Its f-measure...