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SPAdes
- Referenced in 14 articles
[sw17004]
- genome assemblies of uncultivated organisms. Assembly of single-cell data is challenging because of highly ... describe SPAdes, a new assembler for both single-cell and standard (multicell) assembly, and demonstrate ... recently released E+V−SC assembler (specialized for single-cell data) and on popular assemblers ... multicell data). SPAdes generates single-cell assemblies, providing information about genomes of uncultivatable bacteria that...
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CoCoNAD
- Referenced in 3 articles
[sw40294]
- CoCoNAD (Continuous-time Closed Neuron Assembly Detection) is a program to find frequent imprecisely synchronous ... groups of neurons, sometimes called cell assemblies. The Python implementation is much slower (by about...
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L-VIBRA
- Referenced in 3 articles
[sw02429]
- manipulator working in an assembly cell. Since RL requires a large amount of learning trials...
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SUGGAR
- Referenced in 16 articles
[sw08883]
- AssembleR (SUGGAR) code is an overset grid assembly program designed for moving body simulations that ... and/or general polyhedral grids for node and cell centered flow solvers...
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ExSPAnder
- Referenced in 1 article
[sw13527]
- recently emerged single-cell sequencing projects. While various NGS assemblers can use information from several ... most assemblers assume uniform read coverage, condition that does not hold for single-cell projects ... pairs in both standard and single-cell assembly projects. Availability and implementation: http://bioinf.spbau.ru/en/spades...
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WorkStream
- Referenced in 10 articles
[sw26345]
- needs to be done independently on every cell, followed by a reduction of these local ... global data structure. For example, matrix assembly, estimating discretization errors, or converting nodal values into...
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SEQuel
- Referenced in 2 articles
[sw16992]
- substitusion erros in assemblies of both standard (multi-cell) and single-cell sequencing data. SEQuel ... sequence data, in combination with multiple NGS assemblers, such as Euler-SR, Velvet, SoapDeNovo, ALLPATHS...
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GOLD
- Referenced in 6 articles
[sw23027]
- Sequencing Projects (such as isolate genome, single-cell genome, metagenome, metatranscriptome) and complex Analysis Projects ... such as genome from metagenome, or combined assembly from multiple Sequencing Projects). GOLD provides...
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MDK
- Referenced in 4 articles
[sw31876]
- real counterparts, the MIX features registers, memory cells, an overflow toggle, comparison flags, input-output ... program the MIX using an assembly language called MIXAL, the MIX Assembly Language...
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FEMPAR
- Referenced in 21 articles
[sw21297]
- unfitted finite element techniques on cut cells, combined with h-adaptivity. The linear solver module ... also provide some ingredients about the assembly of linear systems arising from finite element discretizations...
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UpGene
- Referenced in 3 articles
[sw17355]
- level expression of HIV genes in mammalian cells, which is due primarily to the instability ... algorithm combination, together with PCR-based gene assembly, we have successfully optimized gene sequences ... high-level gene expression in eukaryotic cells. Our findings demonstrate that our user-friendly algorithm...
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SHELXT
- Referenced in 1 article
[sw15296]
- assembled to maximize its connectivity and centred optimally in the unit cell. SHELXT has already...
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MPM3DMP
- Referenced in 8 articles
[sw19366]
- extension of particle-in-cell method to solid mechanics. A parallel MPM code is developed ... threads, the auxiliary arrays are assembled to establish the global nodal array. In the domain...
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AdeptRAPID
- Referenced in 2 articles
[sw01577]
- design and simulate robot-based flexible automation cells. Its goal is to simplify the concepting ... installations used for applications such as mechanical assembly, material handling, or packaging. The need...
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ScalaBLAST
- Referenced in 7 articles
[sw08812]
- molecules that do most of a cell’s work. A typical bacterial genome contains ... genetic code, making it possible to assemble a ”tree of life” by comparing new sequences...
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HELIOS
- Referenced in 1 article
[sw19398]
- depletion calculations of the fast reactor cell with HELIOS 1.10. he article presents advanced application ... where the VVER-440 and SUPERPHENIX fuel assemblies were modelled and compared. The French fast ... connected with spatial discretization of the model cells. It shows a very high influence ... relevant SUPERPHENIX and VVER-440 fuel assemblies situated hypothetically into the infinite lattice with...
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IFE-PIC
- Referenced in 6 articles
[sw20572]
- number of simulation particles. The Particle-in-Cell (PIC) method is one of the major ... parameters for plasma properties is also assembled into a single input file which...
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GRINS
- Referenced in 6 articles
[sw21301]
- unfitted finite element techniques on cut cells, combined with h-adaptivity. The linear solver module ... also provide some ingredients about the assembly of linear systems arising from finite element discretizations...
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AutoNet
- Referenced in 1 article
[sw30811]
- normal functioning of the human cell, it also presents many opportunities for the onset ... nuclear ribonucleoprotein (snRNP) particles through a complex assembly. Each gene-exon is regulated ... wide SRN was constructed for normal human cells and an assessment of the reliability...
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PolySearch
- Referenced in 1 article
[sw16755]
- diseases, tissues, cell compartments, gene/protein names, SNPs, mutations, drugs and metabolites. PolySearch also exploits ... gene identification using a variety of manually assembled ‘gold standard’ text corpuses. Its f-measure...