
jpHMM
 Referenced in 4 articles
[sw10925]
 query sequence phylogenetic recombination breakpoints are predicted and each region of the sequence is assigned...

SeqBBS
 Referenced in 2 articles
[sw17972]
 identifying CNV regions. We illustrate that a changepoint (or a breakpoint) detection method, along ... normal cell line BL1954. Breakpoints that separate different CNV regions are successfully identified...

SegAnnDB
 Referenced in 2 articles
[sw19542]
 copy number profiles characterize regions of chromosome gains, losses and breakpoints in tumor genomes. Although ... inspect the profiles and manually annotate altered regions, then SegAnnDB determines the precise alteration locations ... alongside known genes. Availability and implementation: The breakpoints project on INRIA GForge hosts the source...

Vaquita
 Referenced in 1 article
[sw33127]
 softclipped reads to the selected regions using a fast bitvector algorithm. Furthermore ... considers the discrepancy of depth distribution around breakpoints using KullbackLeibler divergence. Finally, Vaquita provides...

LEVIATHAN
 Referenced in 1 article
[sw37884]
 candidates, which are pairs of distant regions that share more barcodes than expected. The second ... candidates, and determine the types and breakpoints of actual SVs, and filter out falsepositives...

AMGKQ
 Referenced in 1 article
[sw27197]
 adaptive multivariate GaussKronrod quadrature over hyperrectangular regions of arbitrary dimensionality is proposed and implemented ... singularities are addressed through the use of breakpoints. Its accuracy performance is investigated thoroughly...

GAUSS
 Referenced in 119 articles
[sw00322]
 The GAUSS Mathematical and Statistical System is a...

R
 Referenced in 9188 articles
[sw00771]
 R is a language and environment for statistical...

SINGULAR
 Referenced in 1472 articles
[sw00866]
 SINGULAR is a Computer Algebra system (CAS) for...

TSPLIB
 Referenced in 687 articles
[sw00983]
 TSPLIB is a library of sample instances for...

UCIml
 Referenced in 3266 articles
[sw04074]
 UC Irvine Machine Learning Repository. We currently maintain...

LIBSVM
 Referenced in 1155 articles
[sw04879]
 LIBSVM is a library for Support Vector Machines...

PDCO
 Referenced in 687 articles
[sw05148]
 PDCO: PrimalDual interior method for Convex Objectives...

wavethresh
 Referenced in 134 articles
[sw06084]
 R package wavethresh: Wavelets statistics and transforms , Performs...

GMRFLib
 Referenced in 297 articles
[sw06641]
 Gaussian Markov random fields. Theory and applications. Researchers...

wbs
 Referenced in 67 articles
[sw11110]
 Wild binary segmentation for multiple changepoint detection...

ftnonpar
 Referenced in 67 articles
[sw11128]
 ftnonpar: Features and Strings for Nonparametric Regression. The...

logcondens
 Referenced in 50 articles
[sw11215]
 logcondens: Estimate a LogConcave Probability Density from...

longmemo
 Referenced in 618 articles
[sw11216]
 longmemo: Statistics for LongMemory Processes (Jan Beran...

LAGAN
 Referenced in 17 articles
[sw13192]
 The Lagan Tookit is a set of alignment...