• jpHMM

  • Referenced in 4 articles [sw10925]
  • query sequence phylogenetic recombination breakpoints are predicted and each region of the sequence is assigned...
  • SeqBBS

  • Referenced in 2 articles [sw17972]
  • identifying CNV regions. We illustrate that a change-point (or a breakpoint) detection method, along ... normal cell line BL1954. Breakpoints that separate different CNV regions are successfully identified...
  • SegAnnDB

  • Referenced in 2 articles [sw19542]
  • copy number profiles characterize regions of chromosome gains, losses and breakpoints in tumor genomes. Although ... inspect the profiles and manually annotate altered regions, then SegAnnDB determines the precise alteration locations ... alongside known genes. Availability and implementation: The breakpoints project on INRIA GForge hosts the source...
  • Vaquita

  • Referenced in 1 article [sw33127]
  • soft-clipped reads to the selected regions using a fast bit-vector algorithm. Furthermore ... considers the discrepancy of depth distribution around breakpoints using Kullback-Leibler divergence. Finally, Vaquita provides...
  • LEVIATHAN

  • Referenced in 1 article [sw37884]
  • candidates, which are pairs of distant regions that share more barcodes than expected. The second ... candidates, and determine the types and breakpoints of actual SVs, and filter out false-positives...
  • AMGKQ

  • Referenced in 1 article [sw27197]
  • adaptive multivariate Gauss-Kronrod quadrature over hyperrectangular regions of arbitrary dimensionality is proposed and implemented ... singularities are addressed through the use of breakpoints. Its accuracy performance is investigated thoroughly...
  • GAUSS

  • Referenced in 119 articles [sw00322]
  • The GAUSS Mathematical and Statistical System is a...
  • R

  • Referenced in 9188 articles [sw00771]
  • R is a language and environment for statistical...
  • SINGULAR

  • Referenced in 1472 articles [sw00866]
  • SINGULAR is a Computer Algebra system (CAS) for...
  • TSPLIB

  • Referenced in 687 articles [sw00983]
  • TSPLIB is a library of sample instances for...
  • UCI-ml

  • Referenced in 3266 articles [sw04074]
  • UC Irvine Machine Learning Repository. We currently maintain...
  • LIBSVM

  • Referenced in 1155 articles [sw04879]
  • LIBSVM is a library for Support Vector Machines...
  • PDCO

  • Referenced in 687 articles [sw05148]
  • PDCO: Primal-Dual interior method for Convex Objectives...
  • wavethresh

  • Referenced in 134 articles [sw06084]
  • R package wavethresh: Wavelets statistics and transforms , Performs...
  • GMRFLib

  • Referenced in 297 articles [sw06641]
  • Gaussian Markov random fields. Theory and applications. Researchers...
  • wbs

  • Referenced in 67 articles [sw11110]
  • Wild binary segmentation for multiple change-point detection...
  • ftnonpar

  • Referenced in 67 articles [sw11128]
  • ftnonpar: Features and Strings for Nonparametric Regression. The...
  • logcondens

  • Referenced in 50 articles [sw11215]
  • logcondens: Estimate a Log-Concave Probability Density from...
  • longmemo

  • Referenced in 618 articles [sw11216]
  • longmemo: Statistics for Long-Memory Processes (Jan Beran...
  • LAGAN

  • Referenced in 17 articles [sw13192]
  • The Lagan Tookit is a set of alignment...