• DuMuX

  • Referenced in 50 articles [sw14293]
  • problems, transport of therapeutic agents through biological tissue, and subsurface-atmosphere coupling. The development...
  • iLogDemons

  • Referenced in 7 articles [sw30734]
  • Registration Algorithm for Tracking Incompressible Elastic Biological Tissues. Tracking soft tissues in medical images using ... spatial transformations consistent with the biological characteristics of the tissues. LogDemons algorithm is a fast ... fields. Although computationally efficient, its use for tissue tracking has been limited because ... regularisation, which hampers the implementation of more biologically motivated regularisations. In this work, we improve...
  • DT-MRI

  • Referenced in 7 articles [sw03048]
  • Accurate techniques for simulating sof t biological tissue deformation are an increasingly valuable tool...
  • poroelasticity

  • Referenced in 12 articles [sw39194]
  • equations in modeling interactions between biological fluids and tissues in physiological settings. So, we additionally...
  • Toast++

  • Referenced in 4 articles [sw14492]
  • light in highly scattering, inhomogeneous biological tissues, such as the brain. The inverse solver module...
  • CBPM_curvature_and_cell_guidance

  • Referenced in 2 articles [sw38893]
  • guidance and curvature control in evolving biological tissues. Tissue geometry is an important influence ... evolution of many biological tissues. The local curvature of an evolving tissue induces tissue crowding ... spreading, which leads to differential tissue growth rates, and to changes in cellular tension, which ... interacts with curvature control in evolving biological tissues. Directed cell motion is involved...
  • WebGestalt

  • Referenced in 7 articles [sw17514]
  • gene sets in various biological contexts, including Gene Ontology, tissue expression pattern, chromosome distribution, metabolic ... recommends and performs statistical tests to suggest biological areas that are important to a gene ... with genes over-represented in various human tissue types. Exploration of all the 48 gene...
  • CellFIT

  • Referenced in 2 articles [sw24132]
  • CellFIT to several live and fixed biological tissues reveals considerable force variability within a cell...
  • TiQuant

  • Referenced in 1 article [sw34317]
  • TiQuant: software for tissue analysis, quantification and surface reconstruction. Motivation: TiQuant is a modular ... software tool for efficient quantification of biological tissues based on volume data obtained by biomedical ... chains tailored to the analysis of different tissue types which have been experimentally verified. TiQuant ... utmost importance for tissue modelling in systems biology. Availability and implementation: TiQuant is freely available...
  • fastPLI

  • Referenced in 1 article [sw38405]
  • measurement simulation. In order to recreate biological tissue as a model, it is important that...
  • gensei

  • Referenced in 1 article [sw25985]
  • fibres of the extracellular matrix forming biological tissues. These images represent either serial consecutive sections...
  • VirtualLeaf

  • Referenced in 4 articles [sw28766]
  • patterned cell division and cell expansion, and tissue mechanics. The multilevel regulatory mechanisms complicate classic ... molecular genetics or functional genomics approaches to biological development, because these methodologies implicitly assume ... plant tissue morphogenesis. The current version defines a set of biologically intuitive C++ objects, including...
  • GEOquery

  • Referenced in 10 articles [sw17285]
  • biology tool. Experimental data have been generated on a huge number of organisms, tissue types ... data will increase the efficiency with which biologically important conclusions can be drawn from published...
  • BioFVM-X

  • Referenced in 1 article [sw42169]
  • biological simulations successfully applied to tissue and cancer biology problems. Currently, BioFVM is only shared...
  • PhysiCell

  • Referenced in 11 articles [sw30634]
  • studying many interacting cells in dynamic tissue microenvironments. It builds upon a multi-substrate biotransport ... diffusing substrates and signaling factors. It includes biologically-driven sub-models for cell cycling, apoptosis...
  • Babelomics

  • Referenced in 6 articles [sw36144]
  • tissues mining tool, respectively. Additionally, another module, FatiScan, provides a new procedure that integrates biological...
  • LBIBCell

  • Referenced in 3 articles [sw21532]
  • environment offers core functionalities for the tissue and signalling models. In addition, the software offers ... great flexibility to add custom extensions and biologically motivated processes. Cells are represented as highly ... elastic polygons; the viscous properties of the tissue are modelled by a Newtonian fluid...
  • AIFS

  • Referenced in 14 articles [sw00023]
  • stress is put on modeling of biological forms and their atributes such as: continuous deformation ... last is useful for creating images of tissues in different stages of development, symmetry, gradual...
  • BioShape

  • Referenced in 7 articles [sw08522]
  • Bone remodelling in BioShape. Many biological phenomena are inherently multiscale, i.e., they are characterised ... remodelling, where macroscopic behaviour (at organ and tissue scale) and microstructure (at cell scale) strongly...