• SALBPGen

  • Referenced in 22 articles [sw14513]
  • SALBPGen - A systematic data generator for (simple) assembly line balancing. Assembly line balancing ... extensively researched decision problem which arises when assembly line production systems are designed and operated ... instance generator for the simple assembly line balancing problem (SALBP) which can be applied ... other assembly line balancing problem, too. It is able to systematically create instances with very...
  • SHEEP

  • Referenced in 38 articles [sw00855]
  • This version was written in the assembly language MACRO-10 for DEC-10 computers...
  • Chimera

  • Referenced in 36 articles [sw10908]
  • related data, including density maps, supramolecular assemblies, sequence alignments, docking results, trajectories, and conformational ensembles...
  • BLAT

  • Referenced in 36 articles [sw16891]
  • only be computed once for each genome assembly. BLAT has several major stages. It uses...
  • Slatec

  • Referenced in 35 articles [sw04367]
  • Energy Laboratories. The objective is to cooperatively assemble and install at each site a mathematical...
  • MEGA

  • Referenced in 35 articles [sw09078]
  • MEGA provides many convenient facilities for the assembly of sequence data sets from files...
  • ALLPATHS

  • Referenced in 15 articles [sw06112]
  • ALLPATHS-LG is a whole-genome shotgun assembler that can generate high-quality genome assemblies ... significant difference between ALLPATHS and traditional assemblers such as Arachne is that ALLPATHS assemblies ... that has been absent from previous genome assemblies...
  • CAP3

  • Referenced in 17 articles [sw08935]
  • CAP3: A DNA Sequence Assembly Program. We describe the third generation of the CAP sequence ... assembly program. The CAP3 program includes a number of improvements and new features. The program ... also uses forward–reverse constraints to correct assembly errors and link contigs. Results of CAP3...
  • SPAdes

  • Referenced in 13 articles [sw17004]
  • SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing. The lion ... gene-centric metagenomic data with whole-genome assemblies of uncultivated organisms. Assembly of single-cell ... chimeric reads. We describe SPAdes, a new assembler for both single-cell and standard (multicell ... assembly, and demonstrate that it improves on the recently released E+V−SC assembler (specialized...
  • I-TASSER

  • Referenced in 18 articles [sw17207]
  • structure and function prediction. The iterative threading assembly refinement (I-TASSER) server is an integrated ... from multiple threading alignments and iterative structural assembly simulations. The function of the protein...
  • SUGGAR

  • Referenced in 15 articles [sw08883]
  • general capability moving body overset grid assembly. The Structured, Unstructured, and Generalized overset Grid AssembleR ... SUGGAR) code is an overset grid assembly program designed for moving body simulations that...
  • ABySS

  • Referenced in 12 articles [sw17343]
  • ABySS: a parallel assembler for short read sequence data. Widespread adoption of massively parallel deoxyribonucleic ... recent development of de novo short read assembly algorithms. A common shortcoming of the available ... tools is their inability to efficiently assemble vast amounts of data generated from large-scale ... address this limitation, we developed ABySS (Assembly By Short Sequences), a parallelized sequence assembler...
  • TSFC

  • Referenced in 24 articles [sw20272]
  • code that carries out the finite element assembly. In this paper we present...
  • MEGAN

  • Referenced in 17 articles [sw33189]
  • environmental fosmid and BAC clones, or environmental assemblies. Emerging sequencing-by-synthesis technologies with very ... dissected without the need for assembly or the targeting of specific phylogenetic markers. It provides...
  • 2-ANTBAL

  • Referenced in 11 articles [sw19724]
  • colony optimisation algorithm for balancing two-sided assembly lines. Two-sided assembly lines ... special type of assembly lines in which workers perform assembly tasks in both sides ... crucial importance, especially in the assembly of large-sized products, like automobiles, buses or trucks ... address the two-sided mixed-model assembly line balancing problem. First, a mathematical programming model...
  • GAGE

  • Referenced in 11 articles [sw13528]
  • GAGE: a critical evaluation of genome assemblies and assembly algorithms. GAGE is an evaluation ... very latest large-scale genome assembly algorithms. We have organized this ”bake ... produce a realistic assessment of genome assembly software in a rapidly changing field of next ... Research: GAGE: A critical evaluation of genome assemblies and assembly algorithms...
  • FEMPAR

  • Referenced in 21 articles [sw21297]
  • also provide some ingredients about the assembly of linear systems arising from finite element discretizations...
  • IBM PC Assembler

  • Referenced in 12 articles [sw34510]
  • assembler language and programming; INTEL 8080, 8086, 80286, 80386, 80486, 80x86 assembly language...
  • RSEM

  • Referenced in 12 articles [sw17160]
  • important for quantification with de novo transcriptome assemblies in the absence of sequenced genomes ... combination with a de novo transcriptome assembler, RSEM enables accurate transcript quantification for species without ... useful for quantification with de novo transcriptome assemblies. In addition, RSEM has enabled valuable guidance...
  • FELICITY

  • Referenced in 19 articles [sw12294]
  • streamline implementation of FE discretizations (e.g. matrix assembly) by automatic code generation. The resultant sparse...