• ADMIXMAP

  • Referenced in 4 articles [sw13671]
  • ADMIXMAP - a Program to Model Admixture Using Marker Genotype Data. ADMIXMAP is a general-purpose ... program for modelling admixture, using marker genotypes and trait data on a sample of individuals ... based on a multilevel model for the distribution of individual admixture in the population ... hybrid chromosomes. This makes it possible to model the associations of ancestry between linked marker...
  • admixture

  • Referenced in 5 articles [sw26449]
  • simple accelerated EM implementation of the ADMIXTURE model in R, plus extensions. The ADMIXTURE software ... very slow convergence of EM. The ADMIXTURE software is implemented using a quasi-Newton method ... algorithm. I’ve modified the model to allow for genotype errors, and this seems ... implementation will facilitate development of extensions to ADMIXTURE. One extension I have developed here...
  • AABC

  • Referenced in 6 articles [sw16116]
  • well as on a model of the admixture history of hybrid populations...
  • POPS

  • Referenced in 1 article [sw24119]
  • latent regression models, POPS implements algorithms that improve estimation of individual admixture proportions and cluster ... POPS defines ancestry distribution models allowing its users to forecast admixture proportion and cluster membership...
  • fastSTRUCTURE

  • Referenced in 3 articles [sw25207]
  • efficient algorithms for approximate inference of the model underlying the STRUCTURE program using a variational ... ADMIXTURE. Furthermore, our results show that the heuristic scores for choosing model complexity provide...
  • SABER

  • Referenced in 4 articles [sw33848]
  • ancestral LD; however it does not model haplotype structure. Input files are typical and include ... used to estimate time since admixture. Reconstructing Genetic Ancestry Blocks in Admixed Individuals...
  • HapMix

  • Referenced in 6 articles [sw33847]
  • HAPMIX, which employs an explicit population genetic model to perform such local ancestry inference based ... about ancestral populations, and inferring dates of admixture. We validate the method empirically by applying...
  • MALDsoft

  • Referenced in 1 article [sw33852]
  • statistical methods for analyzing multipoint data from admixture-mapping studies to detect “ancestry association ... statistics do not assume a particular disease model; instead, they are based simply ... ancestral populations, the power of admixture mapping can be comparable to that of association mapping...
  • R

  • Referenced in 8601 articles [sw00771]
  • R is a language and environment for statistical...
  • PRISM

  • Referenced in 416 articles [sw01186]
  • PRISM: Probabilistic symbolic model checker. In this paper...
  • HAPLO

  • Referenced in 23 articles [sw04580]
  • HAPLO: A Program Using the EM Algorithm to...
  • MixMoGenD

  • Referenced in 5 articles [sw08624]
  • Variable selection in model-based clustering using multilocus...
  • SQUAREM

  • Referenced in 14 articles [sw12282]
  • R package SQUAREM: Squared extrapolation methods for accelerating...
  • PMTK

  • Referenced in 168 articles [sw14689]
  • PMTK is a collection of Matlab/Octave functions, written...
  • Eigenstrat

  • Referenced in 53 articles [sw33845]
  • The EIGENSOFT package combines functionality from our population...
  • Frappe

  • Referenced in 9 articles [sw33846]
  • Frappe: frappe is a frequentist approach for estimating...