• popsynth

  • Referenced in 1 article [sw39984]
  • created via classes or structured YAML files. Users can construct their own classes for spatial...
  • yaml2sbml

  • Referenced in 1 article [sw38702]
  • model specified in a YAML file into SBML for ODE simulation and into PEtab ... translator of ODE models specified in YAML into SBML/PEtab via a Python and a command...
  • badgecreatr

  • Referenced in 0 articles [sw15773]
  • will also search for a .travis.yml file and create a ’Travis’ badge ... placed below the top YAML content of your Rmarkdown file (Readme.Rmd). Currently creates badges...
  • f90nml

  • Referenced in 1 article [sw29127]
  • modifying Fortran namelist files. A namelist file is parsed and converted into an Namelist object ... namelists and other configuration formats. JSON and YAML formats are currently supported...
  • COPASI

  • Referenced in 71 articles [sw12253]
  • COPASI: biochemical network simulator. COPASI is a software...
  • libSBML

  • Referenced in 13 articles [sw12937]
  • libSBML: An API library for SBML. Summary: LibSBML...
  • Python

  • Referenced in 2164 articles [sw14460]
  • Python is a widely used high-level, general...
  • Data2Dynamics

  • Referenced in 12 articles [sw25272]
  • Data2Dynamics: a modeling environment tailored to parameter estimation...
  • MOCCASIN

  • Referenced in 2 articles [sw34252]
  • MOCCASIN stands for ”Model ODE Converter for Creating...
  • SimpleSBML

  • Referenced in 3 articles [sw34911]
  • SimpleSBML: A Python package for creating, editing, and...
  • Antimony

  • Referenced in 5 articles [sw34912]
  • Antimony: a modular model definition language. Summary: The...
  • PEtab

  • Referenced in 4 articles [sw36544]
  • PEtab - interoperable specification of parameter estimation problems in...
  • ScrumPy

  • Referenced in 2 articles [sw38703]
  • ScrumPy: metabolic modelling with Python. ScrumPy is a...
  • AMICI

  • Referenced in 2 articles [sw38704]
  • AMICI: high-performance sensitivity analysis for large ordinary...