• SNVMix

• Referenced in 4 articles [sw29569]
• evaluated these approaches on 16 ovarian cancer RNASeq datasets with matched genotyping arrays...

• PROPER

• Referenced in 2 articles [sw17314]
• package PROPER: PROspective Power Evaluation for RNAseq. This package provide simulation based methods for evaluating...

• compcodeR

• Referenced in 1 article [sw23834]
• expression methods for RNA-seq data. Bioconductor: RNAseq data simulation, differential expression analysis and performance ... different methods for differential expression analysis of RNAseq data. It also contains functions for simulating...

• RNASeqR

• Referenced in 1 article [sw28858]
• After running functions in order, a basic RNASeq analysis would be done easily...

• R

• Referenced in 8984 articles [sw00771]
• R is a language and environment for statistical...

• Snow

• Referenced in 20 articles [sw01447]
• Snow: A parallel computing framework for the R...

• STAR

• Referenced in 14 articles [sw02515]
• STAR: ultrafast universal RNA-seq aligner. Motivation: Accurate...

• Bioconductor

• Referenced in 309 articles [sw04205]
• Bioconductor provides tools for the analysis and comprehension...

• faraway

• Referenced in 23 articles [sw04357]
• Extending the linear model with R. Generalized linear...

• Rfam

• Referenced in 33 articles [sw04637]
• The Rfam database is a collection of RNA...

• edgeR

• Referenced in 49 articles [sw06936]
• edgeR: a Bioconductor package for differential expression analysis...

• RNAshapes

• Referenced in 7 articles [sw07960]
• RNAshapes: an integrated RNA analysis package based on...

• onechannelgui

• Referenced in 3 articles [sw07962]
• oneChannelGUI: A graphical interface designed to facilitate analysis...

• DEGseq

• Referenced in 11 articles [sw07998]
• DEGseq: an R package for identifying differentially expressed...

• R-INLA

• Referenced in 70 articles [sw08014]
• Extending integrated nested Laplace approximation to a class...

• pegas

• Referenced in 4 articles [sw08307]
• pegas: Population and Evolutionary Genetics Analysis System. pegas...

• affy

• Referenced in 35 articles [sw08345]
• An R Package for Analyses of Affymetrix Oligonucleotide...

• Rcpp

• Referenced in 224 articles [sw08385]
• Rcpp: Seamless R and C++ Integration. The Rcpp...

• BaySeq

• Referenced in 17 articles [sw10343]
• baySeq: Empirical Bayesian analysis of patterns of differential...

• DEseq

• Referenced in 55 articles [sw10344]
• DESeq: Differential gene expression analysis based on the...