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SNVMix
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[sw29569]
- evaluated these approaches on 16 ovarian cancer RNASeq datasets with matched genotyping arrays...
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PROPER
- Referenced in 2 articles
[sw17314]
- package PROPER: PROspective Power Evaluation for RNAseq. This package provide simulation based methods for evaluating...
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compcodeR
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[sw23834]
- expression methods for RNA-seq data. Bioconductor: RNAseq data simulation, differential expression analysis and performance ... different methods for differential expression analysis of RNAseq data. It also contains functions for simulating...
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RNASeqR
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[sw28858]
- After running functions in order, a basic RNASeq analysis would be done easily...
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R
- Referenced in 9810 articles
[sw00771]
- R is a language and environment for statistical...
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Snow
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[sw01447]
- Snow: A parallel computing framework for the R...
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STAR
- Referenced in 15 articles
[sw02515]
- STAR: ultrafast universal RNA-seq aligner. Motivation: Accurate...
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Silhouettes
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[sw03705]
- Silhouettes: a graphical aid to the interpretation and...
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Bioconductor
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[sw04205]
- Bioconductor provides tools for the analysis and comprehension...
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CRAN
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[sw04351]
- R is ‘GNU S’, a freely available language...
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faraway
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[sw04357]
- Extending the linear model with R. Generalized linear...
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ggplot2
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- R package ggplot2: An implementation of the Grammar...
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FactoMineR
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[sw04573]
- R package FactoMineR: Multivariate Exploratory Data Analysis and...
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Rfam
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[sw04637]
- The Rfam database is a collection of RNA...
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edgeR
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[sw06936]
- edgeR: a Bioconductor package for differential expression analysis...
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RNAshapes
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[sw07960]
- RNAshapes: an integrated RNA analysis package based on...
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onechannelgui
- Referenced in 3 articles
[sw07962]
- oneChannelGUI: A graphical interface designed to facilitate analysis...
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DEGseq
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[sw07998]
- DEGseq: an R package for identifying differentially expressed...
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R-INLA
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[sw08014]
- Extending integrated nested Laplace approximation to a class...
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pegas
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[sw08307]
- pegas: Population and Evolutionary Genetics Analysis System. pegas...