
RNAglib
 Referenced in 1 article
[sw39986]
 Python Package for RNA 2.5D Graphs. RNA 3D architectures are stabilized by sophisticated networks ... encoded as multirelational graphs and efficiently exploited by graph theoretical approaches and recent progresses ... library that eases the use of this representation, by providing clean data, methods to load ... this representation. RNAglib also offers other utilities to model RNA with 2.5D graphs, such...

VeRNAl
 Referenced in 1 article
[sw39988]
 challenge in the field of RNA structural biology and network analysis. State ... motif finding problem as a graph representation learning and clustering task. This framing takes advantage ... nature of graph representations to model the flexibility and variability of RNA motifs...

CENTROIDFOLD
 Referenced in 2 articles
[sw17123]
 sequence and a multiple alignment of RNA sequences. It responses with a prediction result shown ... popular basepair notation and a graph representation. PDF version of the graph representation ... quite simple. You can paste a single RNA sequence (FASTA or plain sequence text...

CoCoA
 Referenced in 654 articles
[sw00143]
 CoCoA is a system for Computations in Commutative...

gfun
 Referenced in 144 articles
[sw00344]
 The gfun package provides tools for determining and...

LAPACK
 Referenced in 1701 articles
[sw00503]
 LAPACK is written in Fortran 90 and provides...

LEDA
 Referenced in 263 articles
[sw00509]
 In the core computer science areas  data structures...

Macaulay2
 Referenced in 1921 articles
[sw00537]
 Macaulay2 is a software system devoted to supporting...

Maple
 Referenced in 5369 articles
[sw00545]
 The result of over 30 years of cutting...

Matlab
 Referenced in 13488 articles
[sw00558]
 MATLAB® is a highlevel language and interactive...

mclust
 Referenced in 308 articles
[sw00563]
 R package mclust: Normal Mixture Modeling for Model...

R
 Referenced in 9832 articles
[sw00771]
 R is a language and environment for statistical...

PERL
 Referenced in 270 articles
[sw01225]
 Programming Perl. Perl is a language for easily...

Graphviz
 Referenced in 90 articles
[sw01283]
 Graphviz is open source graph visualization software. Graph...

ABACUS
 Referenced in 116 articles
[sw02948]
 ABACUS is a software system written in C...

Haskell
 Referenced in 879 articles
[sw03521]
 Haskell is a standardized, generalpurpose purely functional...

CODA
 Referenced in 345 articles
[sw04290]
 R package coda: Output analysis and diagnostics for...

CRAN
 Referenced in 550 articles
[sw04351]
 R is ‘GNU S’, a freely available language...

ggplot2
 Referenced in 354 articles
[sw04557]
 R package ggplot2: An implementation of the Grammar...

svdpack
 Referenced in 60 articles
[sw04819]
 SVDPACK comprises four numerical (iterative) methods for computing...