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  • SOAPdenovo
  • Referenced in 9 articles [sw17028]
  • SOAP: Short Oligonucleotide Analysis Package. SOAPdenovo is a...

  • RNAmute
  • Referenced in 2 articles [sw17059]
  • The RNAmute web server for the mutational analysis...

  • RNAexinv
  • Referenced in 2 articles [sw17114]
  • RNAexinv: an extended inverse RNA folding from shape...

  • RNAfbinv
  • Referenced in 1 article [sw17115]
  • RNAfbinv: an interactive Java application for fragment-based...

  • RNAalifold
  • Referenced in 3 articles [sw17116]
  • RNAalifold: improved consensus structure prediction for RNA alignments...

  • CONTRAfold
  • Referenced in 8 articles [sw17117]
  • For several decades, free energy minimization methods have...

  • Rnaz
  • Referenced in 3 articles [sw17118]
  • Rnaz 2.0: improved noncoding RNA detection. RNAz is...

  • RactIP
  • Referenced in 2 articles [sw17120]
  • RactIP: fast and accurate prediction of RNA-RNA...

  • COFOLD
  • Referenced in 1 article [sw17121]
  • COFOLD: an RNA secondary structure prediction method that...

  • PicXAA-R
  • Referenced in 1 article [sw17122]
  • PicXAA-R: efficient structural alignment of multiple RNA...

  • IPknot
  • Referenced in 3 articles [sw17124]
  • IPknot: fast and accurate prediction of RNA secondary...

  • DAFS
  • Referenced in 1 article [sw17125]
  • DAFS: simultaneous aligning and folding of RNA sequences...

  • PETfold
  • Referenced in 1 article [sw17126]
  • The PETfold and PETcofold web servers for intra...

  • PETcofold
  • Referenced in 3 articles [sw17127]
  • PETcofold: predicting conserved interactions and structures of two...

  • PPfold
  • Referenced in 1 article [sw17128]
  • PPfold 3.0: fast RNA secondary structure prediction using...

  • RNAG
  • Referenced in 2 articles [sw17129]
  • RNAG: a new Gibbs sampler for predicting RNA...

  • RNAspa
  • Referenced in 2 articles [sw17131]
  • RNAspa: a shortest path approach for comparative prediction...