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APBS
- Referenced in 92 articles
[sw05766]
- numerical solution of the Poisson-Boltzmann equation (PBE), one of the most popular continuum models...
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TABI
- Referenced in 29 articles
[sw18194]
- solvated biomolecules described by the linear Poisson-Boltzmann equation. The method employs a well-conditioned ... surface is triangulated and the integral equations are discretized by centroid collocation. The linear system ... compare results for the Poisson-Boltzmann and Poisson equations. We show that the treecode approximation...
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AFMPB
- Referenced in 10 articles
[sw08875]
- described an adaptive fast multipole Poisson-Boltzmann solver for computing the electrostatics in biomolecules. This ... boundary integral equation of the linearized Poisson-Boltzmann equation. Numerical experiments show the efficiency...
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PBEQ-Solver
- Referenced in 14 articles
[sw17203]
- read biomolecular structures, solve the Poisson-Boltzmann (PB) equations and interactively visualize the electrostatic potential...
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SDPBS
- Referenced in 7 articles
[sw17208]
- electrostatics of ionic solvated biomolecules. The Poisson-Boltzmann equation (PBE) is one important implicit solvent...
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SMPBS
- Referenced in 5 articles
[sw23654]
- library of size modified Poisson-Boltzmann equation (SMPBE) solvers that incorporates finite element, finite difference ... SDPBS web server, uses the classic Poisson-Boltzmann model...
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PyGBe
- Referenced in 5 articles
[sw17642]
- Lenhoff (1990) for solving the Poisson-Boltzmann equation of the implicit-solvent model in integral...
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Apbsmem
- Referenced in 4 articles
[sw22298]
- numerically solve the Poisson-Boltzmann (PB) equation, and there are several easy-to-use software ... packages available that solve the PB equation for soluble proteins. Here we present a freely ... Poisson-Boltzmann Solver (APBS) is used as a back-end for solving the PB equation...
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ManifoldCode
- Referenced in 1 article
[sw06974]
- order nonlinear elliptic systems of partial differential equations on domains with the structure of Riemannian ... problems such as the nonlinear Poisson-Boltzmann equation arising in biophysics, the drift-diffusion semiconductor...
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DelEnsembleElec
- Referenced in 1 article
[sw21782]
- ensemble-averaged electrostatic calculations using the Poisson-Boltzmann equation is presented. The general theory...
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DAFMPB
- Referenced in 1 article
[sw40371]
- systems modeled by the linearized Poisson-Boltzmann (LPB) equation. DAFMPB first reformulates the LPB into...
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MPBEC
- Referenced in 1 article
[sw38537]
- numerically solve the Poisson-Boltzmann (PB) equation. There are several software packages available that solve...
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PB-AM
- Referenced in 0 articles
[sw16459]
- Poisson-Boltzmann Analytical Method (PB-AM), a fully analytical solution to the linearized Poisson Boltzmann ... equation. The PB-AM software package includes the generation of outputs files appropriate for visualization ... been integrated into the Adaptive Poisson-Boltzmann Solver (APBS) software package to make it more...
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BEMLIB
- Referenced in 108 articles
[sw00005]
- BEMLIB is a boundary-element software library of...
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FLAME
- Referenced in 39 articles
[sw00293]
- We present a number of application program interfaces...
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LAPACK
- Referenced in 1695 articles
[sw00503]
- LAPACK is written in Fortran 90 and provides...
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Maple
- Referenced in 5363 articles
[sw00545]
- The result of over 30 years of cutting...
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Mathematica
- Referenced in 6337 articles
[sw00554]
- Almost any workflow involves computing results, and that...
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Matlab
- Referenced in 13460 articles
[sw00558]
- MATLAB® is a high-level language and interactive...
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ORTHPOL
- Referenced in 82 articles
[sw00659]
- Algorithm 726: ORTHPOL - A package of routines for...