• APBS

• Referenced in 88 articles [sw05766]
• numerical solution of the Poisson-Boltzmann equation (PBE), one of the most popular continuum models...

• TABI

• Referenced in 22 articles [sw18194]
• solvated biomolecules described by the linear Poisson-Boltzmann equation. The method employs a well-conditioned ... surface is triangulated and the integral equations are discretized by centroid collocation. The linear system ... compare results for the Poisson-Boltzmann and Poisson equations. We show that the treecode approximation...

• AFMPB

• Referenced in 9 articles [sw08875]
• described an adaptive fast multipole Poisson-Boltzmann solver for computing the electrostatics in biomolecules. This ... boundary integral equation of the linearized Poisson-Boltzmann equation. Numerical experiments show the efficiency...

• PBEQ-Solver

• Referenced in 13 articles [sw17203]
• read biomolecular structures, solve the Poisson-Boltzmann (PB) equations and interactively visualize the electrostatic potential...

• SDPBS

• Referenced in 7 articles [sw17208]
• electrostatics of ionic solvated biomolecules. The Poisson-Boltzmann equation (PBE) is one important implicit solvent...

• SMPBS

• Referenced in 4 articles [sw23654]
• library of size modified Poisson-Boltzmann equation (SMPBE) solvers that incorporates finite element, finite difference ... SDPBS web server, uses the classic Poisson-Boltzmann model...

• PyGBe

• Referenced in 4 articles [sw17642]
• Lenhoff (1990) for solving the Poisson-Boltzmann equation of the implicit-solvent model in integral...

• Apbsmem

• Referenced in 4 articles [sw22298]
• numerically solve the Poisson-Boltzmann (PB) equation, and there are several easy-to-use software ... packages available that solve the PB equation for soluble proteins. Here we present a freely ... Poisson-Boltzmann Solver (APBS) is used as a back-end for solving the PB equation...

• ManifoldCode

• Referenced in 1 article [sw06974]
• order nonlinear elliptic systems of partial differential equations on domains with the structure of Riemannian ... problems such as the nonlinear Poisson-Boltzmann equation arising in biophysics, the drift-diffusion semiconductor...

• DelEnsembleElec

• Referenced in 1 article [sw21782]
• ensemble-averaged electrostatic calculations using the Poisson-Boltzmann equation is presented. The general theory...

• MPBEC

• Referenced in 1 article [sw38537]
• numerically solve the Poisson-Boltzmann (PB) equation. There are several software packages available that solve...

• PB-AM

• Referenced in 0 articles [sw16459]
• Poisson-Boltzmann Analytical Method (PB-AM), a fully analytical solution to the linearized Poisson Boltzmann ... equation. The PB-AM software package includes the generation of outputs files appropriate for visualization ... been integrated into the Adaptive Poisson-Boltzmann Solver (APBS) software package to make it more...

• BEMLIB

• Referenced in 101 articles [sw00005]
• BEMLIB is a boundary-element software library of...

• FLAME

• Referenced in 38 articles [sw00293]
• We present a number of application program interfaces...

• LAPACK

• Referenced in 1649 articles [sw00503]
• LAPACK is written in Fortran 90 and provides...

• Maple

• Referenced in 5199 articles [sw00545]
• The result of over 30 years of cutting...

• Mathematica

• Referenced in 6090 articles [sw00554]
• Almost any workflow involves computing results, and that...

• Matlab

• Referenced in 12640 articles [sw00558]
• MATLAB® is a high-level language and interactive...

• ORTHPOL

• Referenced in 79 articles [sw00659]
• Algorithm 726: ORTHPOL - A package of routines for...

• ScaLAPACK

• Referenced in 408 articles [sw00830]
• ScaLAPACK is an acronym for scalable linear algebra...