• HAPGEN2

  • Referenced in 6 articles [sw17354]
  • produce samples with patterns of linkage disequilibrium (LD), which mimic those in real data. However...
  • HapBlock

  • Referenced in 5 articles [sw26434]
  • algorithms. Recent studies have revealed that linkage disequilibrium (LD) patterns vary across the human genome...
  • SIMLA

  • Referenced in 4 articles [sw00862]
  • levels of both linkage (recombination) and linkage disequilibrium (LD) between marker and disease loci ... flexibility in choosing many parameters relevant for linkage and association mapping of complex human diseases...
  • SNPinfo

  • Referenced in 3 articles [sw17360]
  • select SNPs based on GWAS results, linkage disequilibrium (LD), and predicted functional characteristics of both...
  • TAGster

  • Referenced in 2 articles [sw11869]
  • TAGster: efficient selection of LD tag SNPs in single or multiple populations, Summary: Genetic association ... increasingly rely on the use of linkage disequilibrium (LD) tag SNPs to reduce genotyping costs...
  • BALD

  • Referenced in 2 articles [sw20895]
  • SNPs data, constrained hierarchical clustering using Linkage Disequilibrium (LD) measures, the Gap statistic to find...
  • HaploBlockFinder

  • Referenced in 2 articles [sw30041]
  • unveiled discrete block-like structures of linkage disequilibrium (LD) in the human genome. We have ... computer programs to analyze the block-like LD structures (haplotype blocks) based on haplotype data ... haplotype block are supported, including minimal LD range, no historic recombination, and chromosome coverage. Tagged ... haplotype block structure and pattern of linkage disequilibrium. Availability: A web interface for the HaploBlockFinder...
  • snp.plotter

  • Referenced in 2 articles [sw30540]
  • package include options to display a linkage disequilibrium (LD) plot and the ability to plot...
  • Haploview

  • Referenced in 22 articles [sw11870]
  • Haploview: analysis and visualization of LD and haplotype maps. Research over the last few years ... software package that provides computation of linkage disequilibrium statistics and population haplotype patterns from primary...
  • ohtadstats

  • Referenced in 1 article [sw28355]
  • between and Within Populations. Patterns of linkage disequilibrium (LD) across the genome result from ... increase LD near individually selected loci, or it can influence LD between epistatically selected groups ... been derived which compare levels of linkage disequilibrium in subpopulations relative to the total population...
  • LocusZoom

  • Referenced in 1 article [sw29110]
  • signal relative to genomic position, local linkage disequilibrium (LD) and recombination patterns and the positions...
  • LDtests

  • Referenced in 0 articles [sw15396]
  • Hardy-Weinberg Equilibrium. Exact tests for Linkage Disequilibrium (LD) and Hardy-Weinberg Equilibrium...
  • HapSim

  • Referenced in 4 articles [sw35553]
  • data with pre-specified allele frequencies and LD coefficients. We have developed a simulation tool ... such that their allele frequencies and linkage disequilibrium coefficients match exactly those estimated...
  • LDpred

  • Referenced in 1 article [sw33851]
  • LDpred (Vilhjalmsson et al. 2015; Modeling Linkage Disequilibrium Increases Accuracy of Polygenic Risk Scores ... from summary association statistics while accounting for LD between markers. The method infers the posterior...
  • lga972

  • Referenced in 1 article [sw35651]
  • lga972: a cross-platform application for optimizing LD studies using a genetic algorithm. Summary: lga972 ... design features of two-stage genetic linkage disequilibrium studies that minimize the genotyping burden. Availability...
  • R

  • Referenced in 8601 articles [sw00771]
  • R is a language and environment for statistical...
  • rehh

  • Referenced in 2 articles [sw16135]
  • R package rehh. Functions for the detection of...
  • GERBIL

  • Referenced in 4 articles [sw17194]
  • GERBIL: Genotype resolution and block identification using likelihood...
  • genetics

  • Referenced in 4 articles [sw24196]
  • R package genetics: Population Genetics. Classes and methods...
  • Rassoc

  • Referenced in 12 articles [sw25402]
  • Simple Algorithms to Calculate Asymptotic Null Distributions of...