• GBFlearn

  • Referenced in 1 article [sw36067]
  • GBFlearn - Learning with Graph Basis Functions. A very simple toolbox to illustrate how graph basis...
  • azove

  • Referenced in 12 articles [sw04634]
  • solution according to a given linear objective function. All these tasks can be accomplished using ... graph. The size of a BDD is the number of nodes of its graph ... basis for the computation of the variable ordering spectrum of a threshold function...
  • TAUCS

  • Referenced in 31 articles [sw04014]
  • library (1.0) includes the following functionality: Multifrontal Supernodal Cholesky Factorization. This code is quite fast ... minres. Vaidya’s Preconditioners. Augmented Maximum-weight-basis preconditioners. These preconditioners work by dropping nonzeros ... Schur complement elements iteratively. Multilevel-Support-Graph Preconditioners. Similar to domain-decomposition preconditioners. Includes...
  • Qmd-plot

  • Referenced in 3 articles [sw10941]
  • graphs of recorded variables (x, y, ...), as x-y plots or as a function ... which header records are located on the basis of a predefined key (that ... which the user can repeatedly specify a graph to be viewed. Qmd-plot has been...
  • RMol

  • Referenced in 2 articles [sw33262]
  • Molfiles into R objects. This provides the basis to use the RMol object ... analyzing graphs. Associated with the RMol objects, a set of R functions completes the toolset...
  • Skil

  • Referenced in 2 articles [sw26451]
  • algorithmic skeletons, i.e. of higher order functions representing parallel computation patterns. At the same time ... implemented on the basis of skeletons, namely shortest paths in graphs and Gaussian elimination...
  • GOSemSim

  • Referenced in 3 articles [sw16934]
  • gene groups, and have became important basis for many bioinformatics analysis approaches. GOSemSim ... clusters. Four information content (IC)- and a graph-based methods are implemented in the GOSemSim ... yeast are also supported. The functions provided by the GOSemSim offer flexibility for applications...
  • RAG

  • Referenced in 1 article [sw21205]
  • Graphs web resource. Background: The proliferation of structural and functional studies of RNA has revealed ... structural repertoire, we have recently described the basis of a graphical approach for organizing ... database based on graph theory, termed RAG for RNA-As-Graphs, to catalogue and rank ... using a clustering algorithm that classifies RNA graphs into RNA-like and non-RNA groups...
  • NABEECO

  • Referenced in 1 article [sw08321]
  • which has the lowest graph editing cost. Applied to Protein-Protein Interaction (PPI) networks, Network ... networks. Network Alignment is a novel basis, in addition to DNA and amino acid sequence ... interspecies network analysis in drug development, including (functional) knowledge transfer between species...
  • PyGSP

  • Referenced in 2 articles [sw22598]
  • basis, filtering or interpolating signals, plotting graphs, signals, and filters. Its core is spectral graph ... very large graphs. The package includes a wide range of graphs, from point clouds like ... road network; to models for generating random graphs like stochastic block models, sensor networks, Erdős ... Rényi model, Barabási-Albert model; to simple graphs like the path, the ring...
  • RNAspa

  • Referenced in 2 articles [sw17131]
  • shown to be involved in many cellular functions. One of the most important computational problems ... graph. The shortest path in this graph is the basis for structural predictions...
  • GDSCalc

  • Referenced in 1 article [sw28036]
  • each discrete time step and are assigned functions that describe how their states change based ... this paper, we describe a discrete graph dynamical systems (GDSs) application called GDSCalc for computing ... theory. This theory is the basis of the web application; i.e., an understanding...
  • AMD

  • Referenced in 54 articles [sw00039]
  • Algorithm 837: AMD is a set of routines...
  • ANSYS

  • Referenced in 662 articles [sw00044]
  • ANSYS offers a comprehensive software suite that spans...
  • ATLAS

  • Referenced in 197 articles [sw00056]
  • This paper describes the Automatically Tuned Linear Algebra...
  • BARON

  • Referenced in 316 articles [sw00066]
  • BARON is a computational system for solving nonconvex...
  • cdd

  • Referenced in 110 articles [sw00114]
  • The program cdd+ (cdd, respectively) is a C...
  • CGAL

  • Referenced in 360 articles [sw00118]
  • The goal of the CGAL Open Source Project...
  • CoCoA

  • Referenced in 631 articles [sw00143]
  • CoCoA is a system for Computations in Commutative...