
GBFlearn
 Referenced in 1 article
[sw36067]
 GBFlearn  Learning with Graph Basis Functions. A very simple toolbox to illustrate how graph basis...

azove
 Referenced in 12 articles
[sw04634]
 solution according to a given linear objective function. All these tasks can be accomplished using ... graph. The size of a BDD is the number of nodes of its graph ... basis for the computation of the variable ordering spectrum of a threshold function...

TAUCS
 Referenced in 31 articles
[sw04014]
 library (1.0) includes the following functionality: Multifrontal Supernodal Cholesky Factorization. This code is quite fast ... minres. Vaidya’s Preconditioners. Augmented Maximumweightbasis preconditioners. These preconditioners work by dropping nonzeros ... Schur complement elements iteratively. MultilevelSupportGraph Preconditioners. Similar to domaindecomposition preconditioners. Includes...

Qmdplot
 Referenced in 3 articles
[sw10941]
 graphs of recorded variables (x, y, ...), as xy plots or as a function ... which header records are located on the basis of a predefined key (that ... which the user can repeatedly specify a graph to be viewed. Qmdplot has been...

RMol
 Referenced in 2 articles
[sw33262]
 Molfiles into R objects. This provides the basis to use the RMol object ... analyzing graphs. Associated with the RMol objects, a set of R functions completes the toolset...

Skil
 Referenced in 2 articles
[sw26451]
 algorithmic skeletons, i.e. of higher order functions representing parallel computation patterns. At the same time ... implemented on the basis of skeletons, namely shortest paths in graphs and Gaussian elimination...

GOSemSim
 Referenced in 3 articles
[sw16934]
 gene groups, and have became important basis for many bioinformatics analysis approaches. GOSemSim ... clusters. Four information content (IC) and a graphbased methods are implemented in the GOSemSim ... yeast are also supported. The functions provided by the GOSemSim offer flexibility for applications...

RAG
 Referenced in 1 article
[sw21205]
 Graphs web resource. Background: The proliferation of structural and functional studies of RNA has revealed ... structural repertoire, we have recently described the basis of a graphical approach for organizing ... database based on graph theory, termed RAG for RNAAsGraphs, to catalogue and rank ... using a clustering algorithm that classifies RNA graphs into RNAlike and nonRNA groups...

NABEECO
 Referenced in 1 article
[sw08321]
 which has the lowest graph editing cost. Applied to ProteinProtein Interaction (PPI) networks, Network ... networks. Network Alignment is a novel basis, in addition to DNA and amino acid sequence ... interspecies network analysis in drug development, including (functional) knowledge transfer between species...

PyGSP
 Referenced in 2 articles
[sw22598]
 basis, filtering or interpolating signals, plotting graphs, signals, and filters. Its core is spectral graph ... very large graphs. The package includes a wide range of graphs, from point clouds like ... road network; to models for generating random graphs like stochastic block models, sensor networks, Erdős ... Rényi model, BarabásiAlbert model; to simple graphs like the path, the ring...

RNAspa
 Referenced in 2 articles
[sw17131]
 shown to be involved in many cellular functions. One of the most important computational problems ... graph. The shortest path in this graph is the basis for structural predictions...

GDSCalc
 Referenced in 1 article
[sw28036]
 each discrete time step and are assigned functions that describe how their states change based ... this paper, we describe a discrete graph dynamical systems (GDSs) application called GDSCalc for computing ... theory. This theory is the basis of the web application; i.e., an understanding...

AMD
 Referenced in 54 articles
[sw00039]
 Algorithm 837: AMD is a set of routines...

ANSYS
 Referenced in 662 articles
[sw00044]
 ANSYS offers a comprehensive software suite that spans...

ATLAS
 Referenced in 197 articles
[sw00056]
 This paper describes the Automatically Tuned Linear Algebra...

BARON
 Referenced in 316 articles
[sw00066]
 BARON is a computational system for solving nonconvex...

cdd
 Referenced in 110 articles
[sw00114]
 The program cdd+ (cdd, respectively) is a C...

CGAL
 Referenced in 360 articles
[sw00118]
 The goal of the CGAL Open Source Project...

CoCoA
 Referenced in 631 articles
[sw00143]
 CoCoA is a system for Computations in Commutative...