• SparseMatrix

  • Referenced in 724 articles [sw04629]
  • problems with underlying 2D or 3D geometry (as structural engineering, computational fluid dynamics, model reduction...
  • FreeFem++

  • Referenced in 1369 articles [sw01436]
  • 3d) from several branches of physics such as fluid-structure interactions require interpolations of data...
  • CGAL

  • Referenced in 394 articles [sw00118]
  • structures and algorithms like triangulations (2D constrained triangulations and Delaunay triangulations in 2D and 3D ... convex hull algorithms (in 2D, 3D and dD), search structures (kd trees for nearest neighbor...
  • VisIt

  • Referenced in 51 articles [sw05611]
  • three-dimensional (2D and 3D) structured and unstructured meshes. It was designed to interactively handle...
  • SBA

  • Referenced in 24 articles [sw05242]
  • reconstruction vision algorithm to obtain optimal 3D structure and motion (i.e. camera matrix) parameter estimates ... initial estimates, BA simultaneously refines motion and structure by minimizing the reprojection error between ... 3D points and cameras results in the underlying normal equations exhibiting a sparse block structure ... parameters describing cameras and 3D structure. Therefore, it can support virtually any manifestation/parameterization...
  • AutoDock

  • Referenced in 34 articles [sw09659]
  • bind to a receptor of known 3D structure. Current distributions of AutoDock consist...
  • XFEM

  • Referenced in 382 articles [sw01026]
  • modular and extensible system. The programme structure has been designed to meet all natural requirements ... dimensions as well as complex 3D industrial problems...
  • RAPTOR

  • Referenced in 20 articles [sw09002]
  • approach to do protein 3-dimensional (3D) structure prediction via threading. Based on the contact ... graph of the protein 3D structure template, the protein threading problem is formulated...
  • PyMOL

  • Referenced in 39 articles [sw09662]
  • visualization product for rendering and animating 3D molecular structures...
  • VAC

  • Referenced in 20 articles [sw39740]
  • hyperbolic source terms. Due to its modular structure the code can be easily configured ... general 1, 2 or 3D structured grid. In 1D and 2D both axial and slab...
  • OpenLB

  • Referenced in 28 articles [sw08549]
  • second audience, the structure of the code is kept conceptually simple, implementing basic concepts ... single generic code for various 3D lattice structures, such as D3Q15, D3Q19, and D3Q27...
  • FoldRate

  • Referenced in 15 articles [sw35301]
  • knowledge of their 3D (three dimensional) structures is becoming increasingly wide. It is highly desired ... however, need both the sequence and 3D structure information for predicting the folding rate...
  • iCDI-PseFpt

  • Referenced in 15 articles [sw30067]
  • knowledge of the 3D (three-dimensional) structure of protein, unfortunately their ... usage is quite limited because the 3D structures for most protein ion channels are still...
  • SnapPy

  • Referenced in 138 articles [sw06874]
  • manifolds, with a focus on hyperbolic structures. It runs on Mac OS X, Linux ... Windows, and combines a link editor and 3D-graphics for Dirichlet domains and cusp neighborhoods...
  • I-TASSER

  • Referenced in 18 articles [sw17207]
  • function prediction based on the sequence-to-structure-to-function paradigm. Starting from an amino ... three-dimensional (3D) atomic models from multiple threading alignments and iterative structural assembly simulations ... protein is then inferred by structurally matching the 3D models with other known proteins ... contains full-length secondary and tertiary structure predictions, and functional annotations on ligand-binding sites...
  • Kokkos

  • Referenced in 28 articles [sw20455]
  • memory layout of basic data structures like 2d and 3d arrays and allow the transparent ... hardware load and store operations. Such data structures are used in LAMMPS to store atom...
  • NYU Depth

  • Referenced in 11 articles [sw38991]
  • cues can best inform a structured 3D interpretation. We also contribute a novel integer programming...
  • Netgen

  • Referenced in 191 articles [sw06679]
  • Solid Geometry (CSG). The whole task of 3D mesh generation splits into four subproblems ... method. Emphasis is given to the abstract structure of the element generation rules. Several techniques...
  • Rate4Site

  • Referenced in 7 articles [sw35756]
  • proteins of known three-dimensional (3D) structure exist, with yet unknown function. In light ... recent progress in structure determination methodology, this number is likely to increase rapidly. A novel ... homologues whose 3D-structure is known. Functionally important regions often correspond to surface patches...
  • PointNet

  • Referenced in 43 articles [sw31209]
  • 3D Classification and Segmentation. Point cloud is an important type of geometric data structure...