Biopython

Biopython: freely available Python tools for computational molecular biology and bioinformatics. Biopython is a set of freely available tools for biological computation written in Python by an international team of developers. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. The source code is made available under the Biopython License, which is extremely liberal and compatible with almost every license in the world. We work along with the Open Bioinformatics Foundation, who generously host our website, bug tracker, and mailing lists.


References in zbMATH (referenced in 19 articles , 1 standard article )

Showing results 1 to 19 of 19.
Sorted by year (citations)

  1. Gururaj, T.; Pavithra, A. P.: Open-source software tools for bioinformatics (2020)
  2. Nicolas Renaud; Cunliang Geng: The pdb2sql Python Package: Parsing, Manipulation and Analysis of PDB Files Using SQL Queries (2020) not zbMATH
  3. N. Moshiri: TreeSwift: A massively scalable Python tree package (2020) not zbMATH
  4. Yuan, Ye; Bar-Joseph, Ziv: Deep learning for inferring gene relationships from single-cell expression data (2019)
  5. Zamudio, Gabriel S.; Prosdocimi, Francisco; Torres de Farias, Sávio; José, Marco V.: A neutral evolution test derived from a theoretical amino acid substitution model (2019)
  6. Benjamin D. Lee: Python Implementation of Codon Adaptation Index (2018) not zbMATH
  7. Russell Y. Neches; Camille Scott: SuchTree: Fast, thread-safe computations with phylogenetic trees (2018) not zbMATH
  8. Keith, Jonathan M. (ed.): Bioinformatics. Volume I. Data, sequence analysis, and evolution (2017)
  9. Berk Ekmekci, Charles E. McAnany, Cameron Mura: An Introduction to Programming for Bioscientists: A Python-based Primer (2016) arXiv
  10. Carugo, Oliviero (ed.); Eisenhaber, Frank (ed.): Data mining techniques for the life sciences (2016)
  11. Kasabov, Nikola (ed.): Springer handbook of bio-/neuro-informatics (2014)
  12. List, Johann-Mattis: SCA: phonetic alignment based on sound classes (2012) ioport
  13. Elloumi, Mourad (ed.); Zomaya, Albert Y. (ed.): Algorithms in computational molecular biology. Techniques approaches and applications. (2011)
  14. Giraud, Mathieu; Varré, Jean-Stéphane: Parallel position weight matrices algorithms (2011) ioport
  15. Huerta-Cepas, Jaime; Dopazo, Joaquín; Gabaldón, Toni: ETE: a python environment for tree exploration (2010) ioport
  16. Burkowski, Forbes J.: Structural bioinformatics. An algorithmic approach (2009)
  17. Cock, Peter J. A.; Antao, Tiago; Chang, Jeffrey T.; Chapman, Brad A.; Cox, Cymon J.; Dalke, Andrew; Friedberg, Iddo; Hamelryck, Thomas; Kauff, Frank; Wilczynski, Bartek; De Hoon, Michiel J. L.: Biopython: freely available python tools for computational molecular biology and bioinformatics (2009) ioport
  18. Han, Mira V.; Zmasek, Christian M.: Phyloxml: XML for evolutionary biology and comparative genomics (2009) ioport
  19. Jankun-Kelly, T. J.; Lindeman, Andrew D.; Bridges, Susan M.: Exploratory visual analysis of conserved domains on multiple sequence alignments (2009) ioport