The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on multi-core desktop computers, including very huge amount of reads data coming from any kind of organisms such as bacteria, plants, animals and even complex samples (e.g. metagenomes).
Keywords for this software
References in zbMATH (referenced in 2 articles )
Showing results 1 to 2 of 2.
- Marchet, Camille; Lecompte, Lolita; Limasset, Antoine; Bittner, Lucie; Peterlongo, Pierre: A resource-frugal probabilistic dictionary and applications in bioinformatics (2020)
- Almodaresi, Fatemeh; Pandey, Prashant; Patro, Rob: Rainbowfish: a succinct colored de Bruijn graph representation (2017)