mCSEA is an R package that implements a Gene Set Enrichment Analysis method to identify DMRs from Illumina450K and EPIC array data. It is especially useful for detecting subtle, but consistent, methylation differences in complex phenotypes. mCSEA also implements functions to integrate gene expression data and to detect genes with significant correlations among methylation and gene expression patterns.
Keywords for this software
References in zbMATH (referenced in 1 article , 1 standard article )
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- Jordi Martorell-Marugán, Víctor González-Rumayor, Pedro Carmona-Sáez: mCSEA: detecting subtle differentially methylated regions (2019) not zbMATH