PROMOTIF

PROMOTIF - a program to identify and analyze structural motifs in proteins. We describe a suite of programs, PROMOTIF, that analyzes a protein coordinate file and provides details about the structural motifs in the protein. The program currently analyzes the following structural features: secondary structure; beta-and gamma-turns; helical geometry and interactions; beta-strands and beta-sheet topology; beta-bulges; beta-hairpins; beta-alpha-beta units and psi-loops; disulphide bridges; and main-chain hydrogen bonding patterns. PROMOTIF creates postscript files showing the examples of each type of motif in the protein, and a summary page. The program can also be used to compare motifs in a group of related structures, such as an ensemble of NMR structures.

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References in zbMATH (referenced in 5 articles )

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  1. Dorn, Márcio; Buriol, Luciana S.; Lamb, Luis C.: MOIRAE: a computational strategy to extract and represent structural information from experimental protein templates (2014) ioport
  2. Shi, Xiaobo; Hu, Xiuzhen; Li, Shaobo; Liu, Xingxing: Prediction of (\beta)-turn types in protein by using composite vector (2011)
  3. Marques, José Rui Ferreira; da Fonseca, Rute R.; Drury, Brett; Melo, André: Conformational characterization of disulfide bonds: a tool for protein classification (2010)
  4. Benros, Cristina; de Brevern, Alexandre G.; Hazout, Serge: Analyzing the sequence-structure relationship of a library of local structural prototypes (2009)
  5. Jahandideh, Samad; Hoseini, Somayyeh; Jahandideh, Mina; Hoseini, Afsaneh; Miri Disfani, Fatemeh: (\gamma)-turn types prediction in proteins using the two-stage hybrid neural discriminant model (2009)