COHCAP: an integrative genomic pipeline for single-nucleotide resolution DNA methylation analysis: This package provides a pipeline to analyze single-nucleotide resolution methylation data (Illumina 450k/EPIC methylation array, targeted BS-Seq, etc.). It provides differential methylation for CpG Sites, differential methylation for CpG Islands, integration with gene expression data, with visualizaton options.
Keywords for this software
References in zbMATH (referenced in 3 articles )
Showing results 1 to 3 of 3.
- Jordi Martorell-Marugán, Víctor González-Rumayor, Pedro Carmona-Sáez: mCSEA: detecting subtle differentially methylated regions (2019) not zbMATH
- Sun, Shuying; Yu, Xiaoqing: HMM-Fisher: identifying differential methylation using a hidden Markov model and Fisher’s exact test (2016)
- Yu, Xiaoqing; Sun, Shuying: HMM-DM: identifying differentially methylated regions using a hidden Markov model (2016)