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XMRF

R package XMRF: Markov Random Fields for High-Throughput Genetics Data. Fit Markov Networks to a wide range of high-throughput genomics data.

Keywords for this software

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  • structure learning
  • R package
  • time-varying graphical models
  • structure estimation
  • Bayesian networks
  • multivariate count distribution
  • EM algorithm
  • identifiability
  • irregular structures
  • jstatsoft.org
  • blankets posterior
  • graphical Lasso
  • Markov network
  • R
  • miRNA
  • (\ell_1)-regularization
  • vector autoregressive models
  • mixed graphical models
  • Poisson network
  • directed acyclic graph
  • dynamic graphical models
  • Markov random fields
  • scoring function

  • URL: cran.r-project.org/web...
  • Code
  • InternetArchive
  • Manual: cran.r-project.org/web...
  • Authors: Ying-Wooi Wan, Genevera I. Allen, Yulia Baker, Eunho Yang, Pradeep Ravikumar, Zhandong Liu
  • Dependencies: R

  • Add information on this software.


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References in zbMATH (referenced in 4 articles )

Showing results 1 to 4 of 4.
y Sorted by year (citations)

  1. Jonas M. B. Haslbeck, Lourens J. Waldorp: mgm: Estimating Time-Varying Mixed Graphical Models in High-Dimensional Data (2020) not zbMATH
  2. Park, Gunwoong; Park, Sion: High-dimensional Poisson structural equation model learning via (\ell_1)-regularized regression (2019)
  3. Sinclair, David; Hooker, Giles: Sparse inverse covariance estimation for high-throughput microRNA sequencing data in the Poisson log-normal graphical model (2019)
  4. Schlüter, Federico; Strappa, Yanela; Milone, Diego H.; Bromberg, Facundo: Blankets joint posterior score for learning Markov network structures (2018)

  • Article statistics & filter:

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  • MSC classification / top
    • Top MSC classes
      • 62 Statistics
      • 68 Computer science

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