• HAP

  • Referenced in 37 articles [sw04870]
  • complexes in the context of topological data analysis...
  • Gudhi

  • Referenced in 14 articles [sw08777]
  • interest for computational topology is topological data analysis, where one is interested in learning topological ... complexes are implemented with a simplex tree data structure. The simplex tree is an efficient...
  • TDA

  • Referenced in 11 articles [sw15508]
  • package TDA: Statistical Tools for Topological Data Analysis. Tools for the statistical analysis of persistent...
  • Persistence Landscape

  • Referenced in 7 articles [sw21260]
  • persistence landscapes toolbox for topological statistics. Topological data analysis provides a multiscale description ... statistics and machine learning with topological data analysis. We present an experiment showing that...
  • SimBa

  • Referenced in 6 articles [sw28063]
  • persistence via Simplicial Batch collapse. In topological data analysis, a point cloud data P extracted...
  • jHoles

  • Referenced in 5 articles [sw15020]
  • persistent homology. Complex networks equipped with topological data analysis are one of the promising tools...
  • TDAstats

  • Referenced in 1 article [sw31276]
  • package TDAstats: Pipeline for Topological Data Analysis. A comprehensive toolset for any useR conducting topological ... data analysis, specifically via the calculation of persistent homology in a Vietoris-Rips complex ... background on computing persistent homology for topological data analysis, see Otter ... used for nonparametric statistical inference in topological data analysis, read Robinson & Turner...
  • RIVET

  • Referenced in 2 articles [sw27770]
  • RIVET is a tool for topological data analysis, and more specifically, for the visualization...
  • Scikit-tda

  • Referenced in 1 article [sw31277]
  • Scikit-TDA is a home for Topological Data Analysis Python libraries intended for non-topologists...
  • TDAmapper

  • Referenced in 0 articles [sw15184]
  • Dimensional Data Using Discrete Morse Theory. Topological Data Analysis using Mapper (discrete Morse theory). Generate...
  • COVAIN

  • Referenced in 1 article [sw10556]
  • multivariate statistics, network topology and biochemical pathway mapping analysis is in all cases recommended. Therefore ... uploading data, data preprocessing, uni- and multivariate statistical analysis, Granger time-series analysis, pathway mapping ... correlation network topology analysis and visualization, and finally saving results in a user-friendly ... analysis of variance, principal components analysis, independent components analysis, clustering and correlation coefficient analysis...
  • ESOM-MAP

  • Referenced in 7 articles [sw12044]
  • distance functions, parameter cooling strategies, ESOM grid topologies, and neighborhood kernels. Visualization of high dimensional ... training process. Interactive, explorative data analysis and clustering by linking ESOM to the training data...
  • MScomplex

  • Referenced in 2 articles [sw21417]
  • Visual Analysis Using Morse-Smale Complexes. The Morse-Smale complex is a topological data structure ... applications that use this data structure for visualization and analysis of data from various scientific...
  • CytoNCA

  • Referenced in 2 articles [sw25624]
  • Cytoscape plugin integrating calculation, evaluation and visualization analysis for multiple centrality measures. IMPLEMENTATION AND PERFORMANCE ... with topological data to detect specific nodes. (iii) CytoNCA offers multiple potent visualization analysis modules...
  • TADD

  • Referenced in 7 articles [sw02821]
  • TADD: A computational framework for data analysis using discrete Morse theory. This paper presents ... discrete Morse theory, which guarantees the topological consistency of the computed extremal structure. Using...
  • F-Tool

  • Referenced in 1 article [sw08742]
  • processing), numerical analysis, and result visualization (post-processing). An efficient, topology-based data representation scheme ... experience in using FTOOL in the Structural Analysis course in PUC-Rio, pointing...
  • MARMOSET

  • Referenced in 3 articles [sw14811]
  • particles. An OSET description of the data strongly constrains the underlying new physics, and sharply ... analysis of new-physics signals, especially when they arise from complicated production and decay topologies ... testing of theoretical hypotheses suggested by both data and model-building intuition, which together chart...
  • NATbox

  • Referenced in 2 articles [sw32087]
  • statistical language for modelling and analysis of FRs from gene expression profiles. It provides options ... impute missing observations in the given data (ii) model FRs and network structure from gene ... visualization and investigate its topological properties using network analysis metrics, (iv) retrieve FRs of interest ... enhance scalability of BSL across high-dimensional data by parallelizing the bootstrap routines...
  • OCOTILLO

  • Referenced in 10 articles [sw09292]
  • presents algorithms, software development and computational complexity analysis for problems arising in the design ... OCOTILLO for combinatorial peptide design using real data libraries. The package provides exact solutions ... general inverse problems based on shortest-path topological indices. Our results are superior both...
  • Situs

  • Referenced in 4 articles [sw09515]
  • crystallography. A set of visualization and analysis procedures, termed the Situs package, has been developed ... protein subunits in low-resolution data. Topology-representing neural networks are employed to vector-quantize...