
faraway
 Referenced in 22 articles
[sw04357]
 foundation of a vast range of statistical methodologies. Julian J. Faraway’s critically acclaimed Linear ... examined regression and analysis of variance, demonstrated the different methods available, and showed in which ... neural networks in statistics. To demonstrate the interplay of theory and practice, throughout the book ... unique presentation of these very modern statistical techniques, holds the potential to break new ground...

RAxML
 Referenced in 34 articles
[sw07716]
 likelihood. Inference of large phylogenetic trees with statistical methods is computationally intensive. We recently introduced ... RAxML. We have demonstrated that RAxML outperforms the currently fastest statistical phylogeny programs (MrBayes, PHYML...

TeachingDemos
 Referenced in 5 articles
[sw16257]
 used in a classroom to demonstrate statistical concepts, or on your own to better understand...

CONTRAfold
 Referenced in 8 articles
[sw17117]
 measured thermodynamic parameters, SCFGs use fullyautomated statistical learning algorithms to derive model parameters. Despite ... between probabilistic and thermodynamic models, demonstrating that statistical learning procedures provide an effective alternative...

oligo
 Referenced in 9 articles
[sw06102]
 application, various groups have demonstrated that the use of modern statistical methodology can substantially improve ... genotype calls with the preprocessed data. We demonstrate how our procedure improves existing approaches using...

GADMM
 Referenced in 24 articles
[sw12640]
 linearized version of GADMM. Numerically, we demonstrate the efficiency of this linearized version of GADMM ... some rather new and core applications in statistical learning. Code packages in Matlab for these...

GAPS
 Referenced in 14 articles
[sw02613]
 demonstrate its superiority. For reallife data sets, ANOVA and MANOVA statistical analyses are performed...

iPPBSOpt
 Referenced in 16 articles
[sw22428]
 statistical samples. Crossvalidation tests by targeting the experimentconfirmed results have demonstrated that...

CircStat
 Referenced in 13 articles
[sw07366]
 analysis of directional data. We cover the statistical background of the available methods and describe ... analyze a dataset from neurophysiology to demonstrate the capabilities of the CircStat toolbox...

PyClone
 Referenced in 8 articles
[sw26928]
 structure in cancer. We introduce PyClone, a statistical model for inference of clonal population structures ... normalcell contamination. Singlecell sequencing validation demonstrates PyClone’s accuracy...

REJECTOR
 Referenced in 3 articles
[sw24737]
 power provided by each summary statistic. The tests demonstrate the precision and accuracy of estimation...

affy
 Referenced in 34 articles
[sw08345]
 probelevel data. We provide some examples demonstrating that having access to and methods ... freely available and widely used statistical language/software R (Ihaka and Gentleman, 1996). The development...

SNPmaxsel
 Referenced in 3 articles
[sw10515]
 such as to maximize the statistic. Its benefit is demonstrated through an application...

rcosmo
 Referenced in 3 articles
[sw29792]
 code. Some statistical functionality of rcosmo is demonstrated for the example data converted into ... transforming data into the HEALPix format and statistical analysis with rcosmo for geostatisticians...

simFrame
 Referenced in 11 articles
[sw08021]
 interfaces for extensions by the user. Since statistical simulation is an embarrassingly parallel process ... functionality of the framework is demonstrated in examples for different simulation designs...

FourTiTwo
 Referenced in 8 articles
[sw07615]
 algebraic statistics. Throughout the paper, the authors effectively use a running example to demonstrate their...

MaD2
 Referenced in 1 article
[sw19555]
 various known cryptanalytic attacks. Its keystream demonstrates good statistical properties and clears all the NIST...

GENEcounter
 Referenced in 1 article
[sw20039]
 results from each of the three statistics packages demonstrates that GENEcounter is well suited...

ergm.userterms
 Referenced in 4 articles
[sw20900]
 template package to demonstrate the use of userspecified statistics for use in ”ergm” models...