• TIGRESS

  • Referenced in 9 articles [sw23826]
  • Inference of Gene REgulation using Stability Selection. BACKGROUND: Inferring the structure of gene regulatory networks ... RESULTS: In this paper, we formulate GRN inference as a sparse regression problem and investigate ... method, least angle regression (LARS) combined with stability selection, for that purpose. We introduce ... call TIGRESS (for Trustful Inference of Gene REgulation with Stability Selection), was ranked among...
  • Averist

  • Referenced in 3 articles [sw20133]
  • which implements an algorithmic approach for the stability analysis of polyhedral switched systems. It implements ... system, and analyzes the graph to infer stability. In the case that the hybrid system...
  • COCONUT

  • Referenced in 38 articles [sw04760]
  • commercial and open-source solver components (inference engines). The first test version of the environment ... been under continuous improvement and stabilization, in particular, during the project P18704-N13 sponsored...
  • DENDRAL

  • Referenced in 8 articles [sw23919]
  • theory of chemical stability and within limiting constraints which are inferred from the data...
  • ADMB

  • Referenced in 13 articles [sw07416]
  • model builder: using automatic differentiation for statistical inference of highly parameterized complex nonlinear models. Many ... advantages of ADMB are flexibility, speed, precision, stability and built-in methods to quantify uncertainty...
  • c060

  • Referenced in 3 articles [sw24284]
  • package c060: Extended Inference for Lasso and Elastic-Net Regularized Cox and Generalized Linear Models ... c060 provides additional functions to perform stability selection, model validation and parameter tuning for glmnet...
  • RNAseqNet

  • Referenced in 0 articles [sw20077]
  • also be used for the inference and the Stability Approach for Regularization Selection (StARS...
  • accuracy

  • Referenced in 2 articles [sw25836]
  • inferences. The tools included in accuracy include a framework for gauging the computational stability...
  • ForneyLab

  • Referenced in 1 article [sw27938]
  • implemented by ForneyLab with automatic differentiation variational inference (ADVI) and Monte Carlo methods as implemented ... stability issues, ForneyLab appears to enjoy an edge relative to its competitors for automated inference...
  • spinyReg

  • Referenced in 4 articles [sw14821]
  • originality of the work is to consider inference through relaxing the model and using ... selection algorithms (such as lasso, adaptive lasso, stability selection or spike-and-slab procedures...
  • POUMM

  • Referenced in 1 article [sw19422]
  • stabilizing selection, to quantify the strength of stabilizing selection, to estimate measurement error ... package implements combined maximum likelihood and Bayesian inference of the univariate Phylogenetic Ornstein-Uhlenbeck Mixed...
  • Multitaper.jl

  • Referenced in 1 article [sw35995]
  • language. Spectral analysis is widely used to infer physical mechanisms for underlying process dynamics from ... frequency. These have the effect of stabilizing the bias and variance of the spectrum estimator...
  • ADOL-C

  • Referenced in 233 articles [sw00019]
  • ADOL-C: Automatic Differentiation of C/C++. We present...
  • ANSYS

  • Referenced in 655 articles [sw00044]
  • ANSYS offers a comprehensive software suite that spans...
  • AXIOM

  • Referenced in 170 articles [sw00063]
  • Axiom is a general purpose Computer Algebra system...
  • cdd

  • Referenced in 110 articles [sw00114]
  • The program cdd+ (cdd, respectively) is a C...
  • CGAL

  • Referenced in 355 articles [sw00118]
  • The goal of the CGAL Open Source Project...
  • Chaste

  • Referenced in 44 articles [sw00122]
  • Chaste: incorporating a novel multi-scale spatial and...
  • CoCoA

  • Referenced in 621 articles [sw00143]
  • CoCoA is a system for Computations in Commutative...
  • Coq

  • Referenced in 1784 articles [sw00161]
  • Coq is a formal proof management system. It...