
Kenzo
 Referenced in 63 articles
[sw04861]
 around the Serre and EilenbergMoore spectral sequences. The first author (re) discovered the importance...

EAT
 Referenced in 17 articles
[sw09167]
 first program ever written implementing spectral sequences, in fact only some particular cases ... EilenbergMoore spectral sequence. The goal was the computation of the first homology groups...

PurityFiltration
 Referenced in 10 articles
[sw07656]
 sophisticated methods such as bidualizing complexes, spectral sequences, associated cohomology, or Spencer cohomology used...

SVMlight
 Referenced in 260 articles
[sw04076]
 SVMs. The algorithm proceeds by solving a sequence of optimization problems lowerbounding the solution ... version of kNearest Neighbor is the Spectral Graph Transducer. SVMlight can also train SVMs...

Wirtinger Flow
 Referenced in 74 articles
[sw34175]
 careful initialization obtained by means of a spectral method, and then refines this initial estimate ... minimal number of random measurements. Indeed, the sequence of successive iterates provably converges...

ChASE
 Referenced in 2 articles
[sw30514]
 advantage of those spectral properties that are pertinent to the entire sequence and not just ... ChASE is the computation of the spectral estimates that enter in the filter ... straightforward portability over heterogeneous platforms. When solving sequences of Hermitian eigenproblems for a portion ... spectrum, ChASE greatly benefits from the sequence’s spectral properties and outperforms direct solvers...

MVGC
 Referenced in 9 articles
[sw14339]
 parameters, (ii) the autocovariance sequence and (iii) the crosspower spectral density of the underlying...

FastMotif
 Referenced in 1 article
[sw34315]
 FastMotif: spectral sequence motif discovery . Results: We present FastMotif, a new motif discovery algorithm that ... Method of Moments. Based on spectral decompositions, our method is robust to model misspecifications ... designed for the analysis of big sequencing data. On HTSelex data, FastMotif extracts motif...

SpectralSequences
 Referenced in 1 article
[sw19978]
 among other things, filtered complexes, spectral sequence pages and maps therein. We illustrate some...

MRG32k3a
 Referenced in 24 articles
[sw18715]
 random number generators. Combining parallel multiple recursive sequences provides an efficient way of implementing random ... good parameter sets, with respect to the spectral test, for combined multiple recursive generators...

multitaper
 Referenced in 1 article
[sw35997]
 Multitaper Method. Implements multitaper spectral analysis using discrete prolate spheroidal sequences (Slepians) and sine tapers ... includes an adaptive weighted multitaper spectral estimate, a coherence estimate, Thomson’s Harmonic Ftest ... complex demodulation. The Slepians sequences are generated efficiently using a tridiagonal matrix solution, and jackknifed...

LAMG
 Referenced in 25 articles
[sw06551]
 computational applications such as semisupervised machine learning; spectral clustering of images, genetic data ... setup phase, during which a sequence of increasingly coarser Laplacian systems is constructed...

GutenTag
 Referenced in 5 articles
[sw35329]
 that match these tags. When multiple candidate sequences result from the database search, the software ... best match by a rapid examination of spectral fragment ions. We compare GutenTag’s accuracy ... missed in prior SEQUEST analysis due to sequence polymorphisms and posttranslational modifications. The software...

PPS
 Referenced in 2 articles
[sw18337]
 method employs periodic nucleotide distributions of DNA sequences and directly calculates power spectra at specific ... with Fourier transform, the PPS method avoids spectral leakage, and reduces background noise that appears ... effectively capture hidden periodicities in DNA sequences. Using a sliding window approach, the PPS method ... different genome elements, including exons, microsatellite DNA sequences, and whole genomes. The results show that...

UniNovo
 Referenced in 2 articles
[sw34892]
 spectra, we develop a universal de novo sequencing algorithm called UniNovo that works well ... types of spectra or even for spectral pairs (e.g. CID/ETD spectral pairs). UniNovo uses...

DIFFRAC
 Referenced in 4 articles
[sw23902]
 convex optimization problem is solved through a sequence of lower dimensional singular value decompositions. This ... then be seen as an alternative to spectral clustering. (3) Prior information on the partition...

MyriMatch
 Referenced in 2 articles
[sw31817]
 MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis. Shotgun proteomics experiments ... fragment ions matched between each peptide sequence and an observed spectrum. These systems, however, generally...

Multitaper.jl
 Referenced in 1 article
[sw35995]
 time series in the Julia language. Spectral analysis is widely used to infer physical mechanisms ... data by a set of orthogonal sequencesdiscrete prolate spheroidal sequences that are optimally concentrated...

iMUSIC
 Referenced in 1 article
[sw27869]
 most popular techniques today for line spectral estimation. If the line spectrum is that ... that include repeats in protein and DNA sequences. The iMUSIC algorithms are based...

BoomerAMG
 Referenced in 158 articles
[sw00086]
 BoomerAMG: A parallel algebraic multigrid solver and preconditioner...