• Kenzo

  • Referenced in 63 articles [sw04861]
  • around the Serre and Eilenberg-Moore spectral sequences. The first author (re-) discovered the importance...
  • EAT

  • Referenced in 17 articles [sw09167]
  • first program ever written implementing spectral sequences, in fact only some particular cases ... Eilenberg-Moore spectral sequence. The goal was the computation of the first homology groups...
  • PurityFiltration

  • Referenced in 10 articles [sw07656]
  • sophisticated methods such as bidualizing complexes, spectral sequences, associated cohomology, or Spencer cohomology used...
  • SVMlight

  • Referenced in 260 articles [sw04076]
  • SVMs. The algorithm proceeds by solving a sequence of optimization problems lower-bounding the solution ... version of k-Nearest Neighbor is the Spectral Graph Transducer. SVMlight can also train SVMs...
  • Wirtinger Flow

  • Referenced in 74 articles [sw34175]
  • careful initialization obtained by means of a spectral method, and then refines this initial estimate ... minimal number of random measurements. Indeed, the sequence of successive iterates provably converges...
  • ChASE

  • Referenced in 2 articles [sw30514]
  • advantage of those spectral properties that are pertinent to the entire sequence and not just ... ChASE is the computation of the spectral estimates that enter in the filter ... straightforward portability over heterogeneous platforms. When solving sequences of Hermitian eigenproblems for a portion ... spectrum, ChASE greatly benefits from the sequence’s spectral properties and outperforms direct solvers...
  • MVGC

  • Referenced in 9 articles [sw14339]
  • parameters, (ii) the autocovariance sequence and (iii) the cross-power spectral density of the underlying...
  • FastMotif

  • Referenced in 1 article [sw34315]
  • FastMotif: spectral sequence motif discovery . Results: We present FastMotif, a new motif discovery algorithm that ... Method of Moments. Based on spectral decompositions, our method is robust to model misspecifications ... designed for the analysis of big sequencing data. On HT-Selex data, FastMotif extracts motif...
  • SpectralSequences

  • Referenced in 1 article [sw19978]
  • among other things, filtered complexes, spectral sequence pages and maps therein. We illustrate some...
  • MRG32k3a

  • Referenced in 24 articles [sw18715]
  • random number generators. Combining parallel multiple recursive sequences provides an efficient way of implementing random ... good parameter sets, with respect to the spectral test, for combined multiple recursive generators...
  • multitaper

  • Referenced in 1 article [sw35997]
  • Multitaper Method. Implements multitaper spectral analysis using discrete prolate spheroidal sequences (Slepians) and sine tapers ... includes an adaptive weighted multitaper spectral estimate, a coherence estimate, Thomson’s Harmonic F-test ... complex demodulation. The Slepians sequences are generated efficiently using a tridiagonal matrix solution, and jackknifed...
  • LAMG

  • Referenced in 25 articles [sw06551]
  • computational applications such as semisupervised machine learning; spectral clustering of images, genetic data ... setup phase, during which a sequence of increasingly coarser Laplacian systems is constructed...
  • GutenTag

  • Referenced in 5 articles [sw35329]
  • that match these tags. When multiple candidate sequences result from the database search, the software ... best match by a rapid examination of spectral fragment ions. We compare GutenTag’s accuracy ... missed in prior SEQUEST analysis due to sequence polymorphisms and posttranslational modifications. The software...
  • PPS

  • Referenced in 2 articles [sw18337]
  • method employs periodic nucleotide distributions of DNA sequences and directly calculates power spectra at specific ... with Fourier transform, the PPS method avoids spectral leakage, and reduces background noise that appears ... effectively capture hidden periodicities in DNA sequences. Using a sliding window approach, the PPS method ... different genome elements, including exons, microsatellite DNA sequences, and whole genomes. The results show that...
  • UniNovo

  • Referenced in 2 articles [sw34892]
  • spectra, we develop a universal de novo sequencing algorithm called UniNovo that works well ... types of spectra or even for spectral pairs (e.g. CID/ETD spectral pairs). UniNovo uses...
  • DIFFRAC

  • Referenced in 4 articles [sw23902]
  • convex optimization problem is solved through a sequence of lower dimensional singular value decompositions. This ... then be seen as an alternative to spectral clustering. (3) Prior information on the partition...
  • MyriMatch

  • Referenced in 2 articles [sw31817]
  • MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis. Shotgun proteomics experiments ... fragment ions matched between each peptide sequence and an observed spectrum. These systems, however, generally...
  • Multitaper.jl

  • Referenced in 1 article [sw35995]
  • time series in the Julia language. Spectral analysis is widely used to infer physical mechanisms ... data by a set of orthogonal sequences---discrete prolate spheroidal sequences that are optimally concentrated...
  • iMUSIC

  • Referenced in 1 article [sw27869]
  • most popular techniques today for line spectral estimation. If the line spectrum is that ... that include repeats in protein and DNA sequences. The iMUSIC algorithms are based...
  • BoomerAMG

  • Referenced in 158 articles [sw00086]
  • BoomerAMG: A parallel algebraic multigrid solver and preconditioner...