• GATK

  • Referenced in 15 articles [sw12019]
  • tolerant tools like coverage calculators and single nucleotide polymorphism (SNP) calling. We conclude that...
  • DIYABC

  • Referenced in 8 articles [sw21021]
  • computation inferences about population history using single nucleotide polymorphism, DNA sequence and microsatellite data. DIYABC ... history using approximate Bayesian computation on DNA polymorphism data. Version 2.0 implements a number ... allows (i) the analysis of single nucleotide polymorphism data at large number of loci, apart...
  • SSAHA

  • Referenced in 10 articles [sw17308]
  • SSAHAalgorithm is used for high-throughput single nucleotide polymorphism (SNP) detection and very large scale...
  • FRANz

  • Referenced in 9 articles [sw35294]
  • genomic markers such as microsatellites and single nucleotide polymorphisms (SNPs). If available, the algorithm makes...
  • oligo

  • Referenced in 9 articles [sw06102]
  • methodology useful for preprocessing Affymetrix single-nucleotide polymorphism chips and obtaining genotype calls with...
  • nsSNPAnalyzer

  • Referenced in 5 articles [sw31126]
  • nsSNPAnalyzer: identifying disease-associated nonsynonymous single nucleotide polymorphisms. Nonsynonymous single nucleotide polymorphisms (nsSNPs) are prevalent...
  • CLUSTAG

  • Referenced in 7 articles [sw30040]
  • obtain a set of tag single nucleotide polymorphisms (SNPs) that can represent all the known...
  • PLASQ

  • Referenced in 6 articles [sw18746]
  • class of such mutations is copy number polymorphisms, comprised of deviations from the normal diploid ... parental chromosomes in cancer cells from single-nucleotide polymorphism (SNP) microarray data. Our approach...
  • dChipSNP

  • Referenced in 6 articles [sw18745]
  • microarrays allow genotyping of thousands of single-nucleotide polymorphisms (SNPs) in parallel. Recently, this technology...
  • ProbABEL

  • Referenced in 6 articles [sw10861]
  • associated with complex traits. Currently, imputed single nucleotide polymorphisms (SNP) data are frequently used...
  • VanillaICE

  • Referenced in 6 articles [sw11310]
  • Background (http://www.biostat.jhsph.edu/ iruczins/software/vanillaice.html): High density single nucleotide polymorphism microarrays (SNP chips) provide information...
  • SNPHarvester

  • Referenced in 5 articles [sw35289]
  • studies. Motivation: Hundreds of thousands of single nucleotide polymorphisms (SNPs) are available for genome-wide...
  • HapBlock

  • Referenced in 5 articles [sw26434]
  • possible to select a set of single nucleotide polymorphism (SNPs; tag SNPs) for genome-wide...
  • dbPTM

  • Referenced in 4 articles [sw29343]
  • disease association based on non-synonymous single nucleotide polymorphisms (nsSNPs...
  • PedGenie

  • Referenced in 4 articles [sw35514]
  • evaluated the role of two tagging-single nucleotide polymorphisms (tSNPs) in the DNA repair gene...
  • GenoSNP

  • Referenced in 4 articles [sw34351]
  • allele-specific intensity data on a single nucleotide polymorphism (SNP) by SNP basis. This approach...
  • WhatsHap

  • Referenced in 4 articles [sw23105]
  • diploid, which requires assigning heterozygous single nucleotide polymorphisms (SNPs) to the two copies...
  • LDheatmap

  • Referenced in 2 articles [sw30542]
  • Display of Pairwise Linkage Disequilibria Between Single Nucleotide Polymorphisms. We describe the R function LDheatmap ... pairwise linkage disequilibrium measurements between single nucleotide polymorphisms within a genomic region. LDheatmap() uses...
  • FastMap

  • Referenced in 3 articles [sw20452]
  • nature and structure of the measured single nucleotide polymorphisms (SNPs). In particular, SNPs are organized ... tree can be used to perform both single marker mapping and haplotype association mapping over...
  • SpeedHap

  • Referenced in 2 articles [sw35353]
  • reading error rate and low coverage. Single nucleotide polymorphism (SNP) is the most frequent form ... pair of homologous human chromosomes from a single individual (SIH). The problem is well known...