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  • ProTherm
  • Referenced in 9 articles [sw16247]
  • Protherm, version 4.0: thermodynamic database for proteins and mutants. Release 4.0 of ProTherm, thermodynamic database ... first version) of several thermodynamic parameters along with experimental methods and conditions, and structural, functional...

  • CHNOSZ
  • Referenced in 0 articles [sw15144]
  • reactions involving minerals and/or biomolecules; a database of thermodynamic properties of aqueous, crystalline and gaseous ... standard molal thermodynamic properties of neutral and ionized proteins; use of the revised Helgeson-Kirkham...

  • Maple
  • Referenced in 4718 articles [sw00545]
  • The result of over 30 years of cutting...

  • Mathematica
  • Referenced in 5224 articles [sw00554]
  • Almost any workflow involves computing results, and that...

  • Matlab
  • Referenced in 10505 articles [sw00558]
  • MATLAB® is a high-level language and interactive...

  • R
  • Referenced in 6593 articles [sw00771]
  • R is a language and environment for statistical...

  • MIRA
  • Referenced in 1 article [sw02392]
  • MIRA is a multi-pass DNA sequence data...

  • STAR
  • Referenced in 7 articles [sw02515]
  • STAR: ultrafast universal RNA-seq aligner. Motivation: Accurate...

  • L-BFGS
  • Referenced in 629 articles [sw03229]
  • Algorithm 778: L-BFGS-B Fortran subroutines for...

  • CUDA
  • Referenced in 1070 articles [sw03258]
  • The NVIDIA® CUDA® Toolkit provides a comprehensive development...

  • Bioconductor
  • Referenced in 226 articles [sw04205]
  • Bioconductor provides tools for the analysis and comprehension...

  • NewtonLib
  • Referenced in 234 articles [sw04796]
  • Numerical Mathematics - NewtonLib. Software repository for Peter Deuflhards...

  • GAUSSIAN
  • Referenced in 164 articles [sw06118]
  • Gaussian is an electronic structure program, used by...

  • GlobPlot
  • Referenced in 5 articles [sw06213]
  • GlobPlot: exploring protein sequences for globularity and disorder...

  • Biopython
  • Referenced in 11 articles [sw07357]
  • Biopython: freely available Python tools for computational molecular...

  • MAFFT
  • Referenced in 21 articles [sw08304]
  • MAFFT: Multiple alignment program for amino acid or...

  • Soap
  • Referenced in 24 articles [sw08915]
  • SOAP: short oligonucleotide alignment program. We have developed...

  • EMan
  • Referenced in 6 articles [sw09056]
  • EMAN: Semiautomated Software for High-Resolution Single-Particle...

  • PyMOL
  • Referenced in 29 articles [sw09662]
  • PyMOL is a powerful and comprehensive molecular visualization...