• marrayClasses

  • Referenced in 7 articles [sw08346]
  • Exploratory Analysis and Normalization of cDNA Microarray Data. This chapter describes a collection of four ... analysis and normalization of two-color cDNA microarray fluorescence intensity data. R’s object-oriented ... systematic representation and manipulation of large microarray datasets of multiple types. The marrayClasses package contains ... automate data input and the creation of microarray-specific R objects for storing these data...
  • BicAT

  • Referenced in 13 articles [sw12371]
  • exploration of the gene expression data, e.g. microarrays...
  • GOTM

  • Referenced in 9 articles [sw13869]
  • interesting genes using Gene Ontology hierarchies. Microarray and other high-throughput technologies are producing large ... sets of co-regulated genes identified from microarray analysis but is adaptable for use with...
  • HykGene

  • Referenced in 9 articles [sw23981]
  • selecting marker genes for phenotype classification using microarray gene expression data. MOTIVATION: Recent studies have ... shown that microarray gene expression data are useful for phenotype classification of many diseases...
  • uniCox

  • Referenced in 12 articles [sw19131]
  • Especially useful for high-dimensional data, including microarray data...
  • Oncomine

  • Referenced in 7 articles [sw17289]
  • cancer gene expression profiles. DNA microarrays have been widely applied to cancer transcriptome analysis; however ... important analytic approaches have been applied to microarray analysis; however, their application is often limited ... deregulated across 18,000 cancer gene expression microarrays, spanning the majority of cancer types...
  • daMA

  • Referenced in 8 articles [sw06093]
  • efficient design of factorial two-colour microarray experiments and for the statistical analysis of factorial ... microarray data. Statistical details are described in Bretz et al. (2003, submitted...
  • Affymetrix

  • Referenced in 8 articles [sw14673]
  • Affymetrix GeneChip Operating Software (GCOS). Affymetrix® microarray solutions include all necessary components for a successful ... microarray experiment, from arrays and reagents to instruments and software. Our complete range of solutions...
  • GeneNetWeaver

  • Referenced in 11 articles [sw22862]
  • inference methods. We are using in vivo microarray compendia side-by-side with synthetic...
  • CASPAR

  • Referenced in 6 articles [sw12242]
  • cancer from gene expression data. Motivation: DNA microarrays allow the simultaneous measurement of thousands ... times for the individual patient based on microarray measurements. CASPAR is based on a multivariate ... sample size settings, that are typical for microarray measurements. This enables CASPAR to automatically select...
  • minet

  • Referenced in 7 articles [sw08432]
  • from a dataset. Once fed with a microarray dataset, the package returns a network where ... tools for inferring transcriptional networks from microarray data. It is freely available from the Comprehensive...
  • fRMA

  • Referenced in 7 articles [sw34334]
  • Barcode. Preprocessing and analysis for single microarrays and microarray batches...
  • beadarray

  • Referenced in 10 articles [sw06092]
  • Illumina BeadArray platform is a novel microarray technology based on randomly assembled arrays of beads...
  • marrayInput

  • Referenced in 5 articles [sw08347]
  • Exploratory Analysis and Normalization of cDNA Microarray Data. This chapter describes a collection of four ... analysis and normalization of two-color cDNA microarray fluorescence intensity data. R’s object-oriented ... systematic representation and manipulation of large microarray datasets of multiple types. The marrayClasses package contains ... automate data input and the creation of microarray-specific R objects for storing these data...
  • marrayNorm

  • Referenced in 5 articles [sw08348]
  • Exploratory Analysis and Normalization of cDNA Microarray Data. This chapter describes a collection of four ... analysis and normalization of two-color cDNA microarray fluorescence intensity data. R’s object-oriented ... systematic representation and manipulation of large microarray datasets of multiple types. The marrayClasses package contains ... automate data input and the creation of microarray-specific R objects for storing these data...
  • marrayPlots

  • Referenced in 5 articles [sw08349]
  • Exploratory Analysis and Normalization of cDNA Microarray Data. This chapter describes a collection of four ... analysis and normalization of two-color cDNA microarray fluorescence intensity data. R’s object-oriented ... systematic representation and manipulation of large microarray datasets of multiple types. The marrayClasses package contains ... automate data input and the creation of microarray-specific R objects for storing these data...
  • PROXIMUS

  • Referenced in 9 articles [sw04989]
  • many areas, including association rule mining, DNA microarray analysis, and business analytics. The original release...
  • twilight

  • Referenced in 9 articles [sw06103]
  • typical microarray setting with gene expression data observed under two conditions, the local false discovery...
  • TWILIGHT

  • Referenced in 9 articles [sw06788]
  • Rate Screening for differential gene expression in microarray studies leads to difficult large-scale multiple...
  • GO-TermFinder

  • Referenced in 9 articles [sw10921]
  • used to draw conclusions from microarray and other biological data, calculating the statistical significance...