
Stan
 Referenced in 159 articles
[sw10200]
 MCMC sampling (NUTS, HMC) and penalized maximum likelihood estimation with Optimization (BFGS). Stan is coded...

STABLE
 Referenced in 103 articles
[sw04843]
 stable random variates. It also performs maximum likelihood estimation of stable parameters and some exploratory ... work is described in the paper ”Maximum likelihood estimation of stable parameters”, J. P. Nolan...

fastDNAml
 Referenced in 92 articles
[sw06651]
 fastDNAml is a program for estimating maximum likelihood phylogenetic trees from nucleotide sequences. Much...

MLwiN
 Referenced in 92 articles
[sw04837]
 fitting multilevel models. It uses both maximum likelihood estimation and Markov Chain Monte Carlo (MCMC...

rms
 Referenced in 82 articles
[sw04532]
 Regression Modeling Strategies , Regression modeling, testing, estimation, validation, graphics, prediction, and typesetting by storing enhanced ... rightcensored responses, and implements penalized maximum likelihood estimation for logistic and ordinary linear models...

VGAM
 Referenced in 80 articles
[sw04490]
 fits many models and distribution by maximum likelihood estimation (MLE) or penalized MLE. Also fits...

AS 154
 Referenced in 51 articles
[sw14113]
 algorithm for exact maximum likelihood estimation of autoregressive moving average models by means of Kalman...

RandomFields
 Referenced in 51 articles
[sw08188]
 value random fields; conditional simulation; kriging; maximum likelihood estimation...

LogConcDEAD
 Referenced in 47 articles
[sw08080]
 Arbitrary Dimensions. Computes a logconcave (maximum likelihood) estimator for i.i.d. data in any number...

bnlearn
 Referenced in 50 articles
[sw08265]
 well as support for parameter estimation (maximum likelihood and Bayesian) and inference, conditional probability queries...

logcondens
 Referenced in 48 articles
[sw11215]
 logcondens: Estimate a LogConcave Probability Density from iid Observations. Given independent and identically distributed ... this package allows to compute the maximum likelihood estimator (MLE) of a density as well...

RStan
 Referenced in 42 articles
[sw13990]
 this package to parse, compile, test, estimate, and analyze Stan models by accessing the header ... variational approximation, and (optionally penalized) maximum likelihood estimation via optimization. In all three cases, automatic...

CDVine
 Referenced in 39 articles
[sw08161]
 estimated either sequentially or by joint maximum likelihood estimation. Sampling algorithms and plotting methods...

dlm
 Referenced in 28 articles
[sw04503]
 Likelihood Analysis of Dynamic Linear Models. Maximum likelihood, Kalman filtering and smoothing, and Bayesian analysis ... state space models, the Kalman filter for estimation and forecasting in dynamic ... linear models with known parameters, and maximum likelihood estimation. It also presents many specific dynamic ... parameters. It presents a discussion of maximum likelihood estimation and a much more elaborated...

VineCopula
 Referenced in 30 articles
[sw08160]
 estimated either sequentially or by joint maximum likelihood estimation. Sampling algorithms and plotting methods...

MIXOR
 Referenced in 23 articles
[sw08990]
 ordinal regression analysis. MIXOR provides maximum marginal likelihood estimates for mixedeffects ordinal probit, logistic ... dependent. The degree of dependency is jointly estimated with the usual model parameters, thus adjusting ... intercepts and slopes across time, and can estimate the degree to which these timerelated ... population of individuals. MIXOR uses marginal maximum likelihood estimation, utilizing a Fisherscoring solution...

vsn
 Referenced in 28 articles
[sw06105]
 uses a robust variant of the maximumlikelihood estimator for the stochastic model of microarray...

glmmAK
 Referenced in 24 articles
[sw13218]
 Linear Mixed Models. This package implements maximumlikelihood estimation in the logistic regression with both...

Maxlik
 Referenced in 24 articles
[sw08900]
 Maxlik: a package for maximum likelihood estimation in R. This paper describes the package maxLik...

QUIC
 Referenced in 20 articles
[sw11795]
 estimation. The ℓ 1 regularized Gaussian maximum likelihood estimator (MLE) has been shown to have...