• UniProt

  • Referenced in 125 articles [sw21320]
  • exists in the database with the majority of sequences coming from genome sequencing projects...
  • iFeature

  • Referenced in 5 articles [sw27776]
  • extracting a wide spectrum of 18 major sequence encoding schemes that encompass 53 different types...
  • iRNAm5C-PseDNC

  • Referenced in 22 articles [sw24531]
  • cause cancers and other major diseases. Given an uncharacterized RNA sequence that contains many...
  • BLAT

  • Referenced in 33 articles [sw16891]
  • sensitivity settings typically used when comparing vertebrate sequences. BLAT’s speed stems from an index ... each genome assembly. BLAT has several major stages. It uses the index to find regions ... likely to be homologous to the query sequence. It performs an alignment between homologous regions...
  • GloMIQO

  • Referenced in 63 articles [sw06266]
  • optimizing mixed-integer quadratically-constrained quadratic programs. Major applications of mixed-integer quadratically-constrained quadratic ... networks optimization problems include: pooling problems, distillation sequences, wastewater treatment and total water systems, hybrid...
  • iACP

  • Referenced in 16 articles [sw23950]
  • iACP: a sequence-based tool for identifying anticancer peptides. Cancer remains a major killer worldwide ... treatment. With the explosive growth of peptide sequences generated in the post genomic...
  • iHyd-PseAAC

  • Referenced in 17 articles [sw27675]
  • proline and lysine. Given an uncharacterized protein sequence, which site ... major diseases, such as stomach and lung cancers. With the avalanche of protein sequences generated ... /iHyd-PseAAC/. Furthermore, for the convenience of the majority of experimental scientists, a step-by-step...
  • SPAdes

  • Referenced in 9 articles [sw17004]
  • thus cannot be sequenced using existing technologies. A major goal of single-cell genomics ... coverage as well as elevated levels of sequencing errors and chimeric reads. We describe SPAdes...
  • Rsubread

  • Referenced in 2 articles [sw17316]
  • sequencing read data. Includes quality assessment of sequence reads, read alignment, read summarization, exon-exon ... reads generated from any of the major sequencing platforms including Illumina GA/HiSeq/MiSeq, Roche...
  • iRNA-AI

  • Referenced in 26 articles [sw24437]
  • adenosine to inosine editing sites in RNA sequences. Catalyzed by adenosine deaminase (ADAR), the adenosine ... also closely associated with a series of major diseases. Therefore, knowledge about ... drug development. Given an uncharacterized RNA sequence that contains many adenosine (A) residues...
  • GenBank

  • Referenced in 6 articles [sw28961]
  • laboratories and batch submissions from large-scale sequencing projects, including whole-genome shotgun ... which integrates data from the major DNA and protein sequence databases along with taxonomy, genome...
  • GlobPlot

  • Referenced in 7 articles [sw06213]
  • GlobPlot: exploring protein sequences for globularity and disorder. A major challenge in the proteomics ... partially or wholly unstructured. Non-globular sequence segments often contain short linear peptide motifs...
  • SeqGAN

  • Referenced in 6 articles [sw26534]
  • goal is for generating sequences of discrete tokens. A major reason lies in that ... discriminative model can only assess a complete sequence, while for a partially generated sequence...
  • PSICOV

  • Referenced in 5 articles [sw17010]
  • sizes of sequence families. Progress could have major impacts in both structure and function prediction...
  • iProt-Sub

  • Referenced in 14 articles [sw27604]
  • major protease families and 38 different proteases). iProt-Sub integrates heterogeneous sequence and structural features...
  • DEGseq

  • Referenced in 10 articles [sw07998]
  • High-throughput RNA sequencing (RNA-seq) is rapidly emerging as a major quantitative transcriptome profiling...
  • iNuc-PhysChem

  • Referenced in 24 articles [sw22453]
  • over 96% in identifying nucleosomal or linker sequences. As a web-server, iNuc-PhysChem ... /server/iNuc-PhysChem. For the convenience of the vast majority of experimental scientists, a step-by-step...
  • Cell-PLoc

  • Referenced in 90 articles [sw09126]
  • drug discovery. To provide the vast majority of experimental scientists with a user-friendly tool ... included had greater than or equal to25% sequence identity to any other protein...
  • GeneScout

  • Referenced in 7 articles [sw31815]
  • prediction of coding sequences from within genomic DNA has been a major rate-limiting step ... that, given a vertebrate genomic DNA sequence S, it is always possible to construct...
  • iRSpot-TNCPseAAC

  • Referenced in 31 articles [sw22412]
  • aforementioned novel approach to incorporate the DNA sequence order information into a discrete model ... Furthermore, for the convenience of the vast majority of experimental scientists, a step-by-step...