• OLego

  • Referenced in 1 article [sw28865]
  • novo spliced mapping of mRNA-seq reads. OLego adopts a multiple-seed-and-extend scheme...
  • R

  • Referenced in 7785 articles [sw00771]
  • R is a language and environment for statistical...
  • Bioconductor

  • Referenced in 282 articles [sw04205]
  • Bioconductor provides tools for the analysis and comprehension...
  • CRAN

  • Referenced in 423 articles [sw04351]
  • R is ‘GNU S’, a freely available language...
  • gcrma

  • Referenced in 86 articles [sw06104]
  • Bioconductor/R package gcrma: Background Adjustment Using Sequence Information...
  • edgeR

  • Referenced in 45 articles [sw06936]
  • edgeR: a Bioconductor package for differential expression analysis...
  • BaySeq

  • Referenced in 17 articles [sw10343]
  • baySeq: Empirical Bayesian analysis of patterns of differential...
  • DEseq

  • Referenced in 48 articles [sw10344]
  • DESeq: Differential gene expression analysis based on the...
  • limma

  • Referenced in 48 articles [sw10458]
  • limma: Linear Models for Microarray Data. A survey...
  • Voom

  • Referenced in 16 articles [sw14009]
  • Voom: precision weights unlock linear model analysis tools...
  • DiffSplice

  • Referenced in 1 article [sw17051]
  • DiffSplice: The genome-wide detection of differential splicing...
  • TopHat

  • Referenced in 22 articles [sw17157]
  • TopHat2: accurate alignment of transcriptomes in the presence...
  • EBSeq

  • Referenced in 7 articles [sw17161]
  • EBSeq: an empirical Bayes hierarchical model for inference...
  • MOABS

  • Referenced in 4 articles [sw23512]
  • MOABS: model based analysis of bisulfite sequencing data...
  • rSeqDiff

  • Referenced in 2 articles [sw27647]
  • rSeqDiff: Detecting Differential Isoform Expression from RNA-Seq...
  • SpliceTrap

  • Referenced in 3 articles [sw29591]
  • SpliceTrap: a method to quantify alternative splicing under...