• PROMOTIF

  • Referenced in 5 articles [sw26864]
  • beta units and psi-loops; disulphide bridges; and main-chain hydrogen bonding patterns. PROMOTIF creates...
  • ArchPRED

  • Referenced in 2 articles [sw17375]
  • candidate loops are inserted in the query protein framework where their side chains are rebuilt ... environment. In the final step remaining candidate loops are ranked by a Z-score that ... observed [ϕ/ψ] main chain dihedral angle propensities. The final loop conformation is built...
  • LinkProt

  • Referenced in 3 articles [sw34129]
  • protein chains and complexes that form links. LinkProt detects deterministic links (with loops closed ... formation of links in networks of protein chains called MacroLinks. Links are presented graphically ... surfaces of minimal area spanned on closed loops. The database presents extensive information about biological...
  • SUSY Phenomenology toolbox

  • Referenced in 7 articles [sw17832]
  • loop renormalization group equations and one-loop corrections to the masses. As an additional feature ... model. Combining all programs provides a closed chain from model building to phenomenology...
  • LOOPER

  • Referenced in 1 article [sw17376]
  • core with loop backbone atoms only. Construction and optimization of the side-chain conformations ... strategy in LOOPER consistently finds near native loop conformations in our validation study...
  • ROSE

  • Referenced in 4 articles [sw04891]
  • data flow analysis (live variables, def-use chain, reaching definition, alias analysis, etc.), class hierarchy ... function), OpenMP directive lowering, automatic parallelization and loop transformations (a loop optimizer supporting aggressive loop...
  • EFTofPNG

  • Referenced in 3 articles [sw20815]
  • final unit serves as a pipeline chain for the obtainment of the final GW templates ... fourth PN order, and the two-loop level. We expect and strongly encourage public development...
  • TDataFrame

  • Referenced in 1 article [sw30644]
  • TDataFrame: functional chains for ROOT data analyses. TDataFrame is a simple and yet powerful ... that can be performed inside the event-loop, while letting users express them...
  • GSNAP

  • Referenced in 1 article [sw17306]
  • extend algorithm using suffix arrays, segment chaining using genomic hash tables, diagonalization using segmental hash ... instructions and eliminate the need for F-loop calculations. Enhancements to the functionality...
  • BioSimulator.jl

  • Referenced in 2 articles [sw28296]
  • Julia. Biological systems with intertwined feedback loops pose a challenge to mathematical modeling efforts. Moreover ... stochastic simulation algorithms based on Markov chain theory. We provide the ability to (a) diagram...
  • Apron

  • Referenced in 66 articles [sw00045]
  • Apron: a library of numerical abstract domains for...
  • ATLAS

  • Referenced in 197 articles [sw00056]
  • This paper describes the Automatically Tuned Linear Algebra...
  • CGAL

  • Referenced in 350 articles [sw00118]
  • The goal of the CGAL Open Source Project...
  • FGb

  • Referenced in 240 articles [sw00286]
  • FGb/Gb libraryGb is a program (191 420 lines...
  • GAP

  • Referenced in 2829 articles [sw00320]
  • GAP is a system for computational discrete algebra...
  • Gmsh

  • Referenced in 564 articles [sw00366]
  • Gmsh is a 3D finite element grid generator...
  • Isabelle

  • Referenced in 606 articles [sw00454]
  • Isabelle is a generic proof assistant. It allows...
  • LAPACK

  • Referenced in 1617 articles [sw00503]
  • LAPACK is written in Fortran 90 and provides...
  • LEDA

  • Referenced in 260 articles [sw00509]
  • In the core computer science areas -- data structures...