
spatstat
 Referenced in 113 articles
[sw04429]
 statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with crossvalidated...

NHPP
 Referenced in 4 articles
[sw03163]
 software reliability engineering. The failure intensity function is usually assumed to be continuous and smooth ... However, in many realistic situations, the failure intensity may be not continuous for many possible ... grouped. Furthermore, if the failure intensity function is completely unknown, we designed a nonparametric method...

TargetSearch
 Referenced in 2 articles
[sw19123]
 programming language with computationally intensive functions written in C for speed and performance. The package...

SPIRAL
 Referenced in 18 articles
[sw18399]
 Sparse Poisson Intensity Reconstruction ALgorithms (SPIRAL) toolbox, SPIRALTAP, is MATLAB code for recovering sparse signals ... minimizes a regularized negative loglikelihood objective function with various penalty choices for the regularization...

PoPPy
 Referenced in 1 article
[sw26479]
 modeling include: 1) How to design intensity functions to describe the mechanism behind observed data ... learn the proposed intensity functions from observed data? The goal of PoPPy is providing...

RladyBug
 Referenced in 5 articles
[sw00810]
 program LadyBug, i.e. for use of this functionality of the package a java virtual machine ... through additivemultiplicative conditional intensities (fitted by the ’twinSIR’ function...

PREvaIL
 Referenced in 10 articles
[sw25073]
 tertiary structures determined, experimental methods for enzyme functional characterization lag behind. Because experimental methods used ... identifying catalytic residues are resource and laborintensive, computational approaches have considerable value ... helping to bridge the sequencestructurefunction gap. In this study, we describe...

marrayClasses
 Referenced in 7 articles
[sw08346]
 postnormalization intensity data for batches of arrays. The marrayInput package provides functions and tcltk widgets ... specific R objects for storing these data. Functions for diagnostic plots of microarray spot statistics ... different types of dye biases (e.g., intensity, spatial, plate biases) and allow...

SOFT
 Referenced in 5 articles
[sw03485]
 surface response. The evaluation of the objective function (average rotation speed) corresponds to the direct ... simulation is computeintensive, we distribute the evaluation of the objective function for the different...

GAMESS
 Referenced in 31 articles
[sw03002]
 Cluster approaches, as well as the Density Functional Theory approximation. Excited states can be computed ... vibrational frequencies, with IR or Raman intensities. Solvent effects may be modeled by the discrete...

PAD3
 Referenced in 4 articles
[sw04149]
 photoelectron diffraction intensities, using the socalled concentric shell algorithm (CSA). The function...

KLEE
 Referenced in 37 articles
[sw04894]
 diverse set of complex and environmentallyintensive programs. We used KLEE to thoroughly check ... identical BUSYBOX and COREUTILS utilities, finding functional correctness errors and a myriad of inconsistencies...

marrayInput
 Referenced in 5 articles
[sw08347]
 postnormalization intensity data for batches of arrays. The marrayInput package provides functions and tcltk widgets ... specific R objects for storing these data. Functions for diagnostic plots of microarray spot statistics ... different types of dye biases (e.g., intensity, spatial, plate biases) and allow...

marrayNorm
 Referenced in 5 articles
[sw08348]
 postnormalization intensity data for batches of arrays. The marrayInput package provides functions and tcltk widgets ... specific R objects for storing these data. Functions for diagnostic plots of microarray spot statistics ... different types of dye biases (e.g., intensity, spatial, plate biases) and allow...

marrayPlots
 Referenced in 5 articles
[sw08349]
 postnormalization intensity data for batches of arrays. The marrayInput package provides functions and tcltk widgets ... specific R objects for storing these data. Functions for diagnostic plots of microarray spot statistics ... different types of dye biases (e.g., intensity, spatial, plate biases) and allow...

RCBLASTn
 Referenced in 2 articles
[sw09014]
 identifies the Blast_Nt_Scan function as the computationally intensive part of the algorithm...

OpenImageR
 Referenced in 0 articles
[sw15878]
 package OpenImageR. Incorporates functions for image preprocessing, filtering and image recognition. The package takes advantage ... RcppArmadillo’ to speed up computationally intensive functions. The histogram of oriented gradients descriptor...

vmake
 Referenced in 1 article
[sw30107]
 with vmake, all identifiers in ISE are intensions, referring to all possible versions ... under multiple versions, including all variables and functions. In addition to providing the mechanisms ... means to precisely control intension resolution across functioncall boundaries, and to manipulate versions...

GPfit
 Referenced in 14 articles
[sw14044]
 based approach that is robust but computationally intensive for maximizing the likelihood. This paper implements ... novel parameterization of the spatial correlation function and a new multistart gradient based optimization...

IHSEP
 Referenced in 0 articles
[sw16423]
 given (timevarying) baseline intensity and an excitation function. Calculate the likelihood ... IHSEP with given baseline intensity and excitation functions for an (increasing) sequence of event times ... original event times). Calculate the mean intensity process...