• DEseq

  • Referenced in 47 articles [sw10344]
  • dependence in count data from high-throughput sequencing assays and test for differential expression based...
  • Minfi

  • Referenced in 5 articles [sw23478]
  • array (the ’450k’ array) provides a high-throughput assay to quantify DNA methylation (DNAm ... genomic features. Although less comprehensive than high-throughput sequencing-based techniques, this product is more...
  • CellProfiler

  • Referenced in 12 articles [sw18751]
  • open-source system designed for flexible, high-throughput cell image analysis, CellProfiler. CellProfiler can address ... variety of biological questions quantitatively, including standard assays (for example, cell count, size, per-cell...
  • propr

  • Referenced in 1 article [sw15745]
  • count data produced by microarray assays or high-throughput RNA-sequencing. As an alternative, Lovell...
  • MuPlex

  • Referenced in 2 articles [sw30947]
  • large-scale multiplex PCR assay design in an automated high-throughput environment, where high coverage...
  • HTqPCR

  • Referenced in 2 articles [sw29359]
  • HTqPCR: high-throughput analysis and visualization of quantitative real-time PCR data in R. Motivation ... microarray hybridization data and clinical diagnostic assays. Although numerous statistical tools are available ... amenable to the tandem analysis of multiple assays. This is problematic when an experiment involves ... analyzed in a high-throughput facility. Results: We have developed HTqPCR, a package...
  • Starr

  • Referenced in 2 articles [sw20401]
  • assay for DNA-protein-binding or post-translational chromatin/histone modifications. As with all high-throughput...
  • V-Xtractor

  • Referenced in 1 article [sw33186]
  • Xtractor: An Open-Source, High-Throughput Software Tool to Identify and Extract Hypervariable Regions ... reliability and facilitates subsequent analysis in community assays...
  • plateCore

  • Referenced in 1 article [sw14265]
  • plate-based data sets from high-throughput FCM screening experiments easier. plateCore was used ... Peripheral Blood Mononucleocyte Cell (PBMC) samples were assayed for 189 different human cell surface markers...
  • Matlab

  • Referenced in 11496 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • R

  • Referenced in 7624 articles [sw00771]
  • R is a language and environment for statistical...
  • MIRA

  • Referenced in 1 article [sw02392]
  • MIRA is a multi-pass DNA sequence data...
  • STAR

  • Referenced in 11 articles [sw02515]
  • STAR: ultrafast universal RNA-seq aligner. Motivation: Accurate...
  • Bioconductor

  • Referenced in 281 articles [sw04205]
  • Bioconductor provides tools for the analysis and comprehension...
  • GlobPlot

  • Referenced in 8 articles [sw06213]
  • GlobPlot: exploring protein sequences for globularity and disorder...
  • Biopython

  • Referenced in 16 articles [sw07357]
  • Biopython: freely available Python tools for computational molecular...
  • MAFFT

  • Referenced in 31 articles [sw08304]
  • MAFFT: Multiple alignment program for amino acid or...
  • Soap

  • Referenced in 34 articles [sw08915]
  • SOAP: short oligonucleotide alignment program. We have developed...
  • EMan

  • Referenced in 8 articles [sw09056]
  • EMAN: Semiautomated Software for High-Resolution Single-Particle...