• fdrtool

  • Referenced in 29 articles [sw08196]
  • package fdrtool: Estimation of (Local) False Discovery Rates and Higher Criticism. This package allows ... estimate both tail area-based false discovery rates (Fdr) as well as local false discovery...
  • mixfdr

  • Referenced in 18 articles [sw06074]
  • mixfdr: Computes false discovery rates and effect sizes using normal mixtures , This package fits normal ... estimates and local and tail area false discovery rates. To make this precise, suppose ... delta[i]=0|z[i]) (local false discovery rates) and P(delta ... tail area false discovery rates...
  • SAM

  • Referenced in 20 articles [sw08356]
  • Thresholding and False Discovery Rates for Detecting Differential Gene Expression in DNA Microarrays ... Some recently developed methodology for estimating false discovery rates and q-values has been included...
  • FAMT

  • Referenced in 27 articles [sw11123]
  • important parameter when controlling the false discovery rate) is also estimated from the FAMT model...
  • multtest

  • Referenced in 20 articles [sw08262]
  • rate (gFWER), tail probability of the proportion of false positives (TPPFP), and false discovery rate...
  • TWILIGHT

  • Referenced in 9 articles [sw06788]
  • Search Algorithm for Estimating the Local False Discovery Rate Screening for differential gene expression ... scale multiple testing problems. The local false discovery rate is a statistical concept for quantifying ... novel estimator for the local false discovery rate that is based on an algorithm which ... detecting the shape of the local false discovery rate and has a smaller bias with...
  • ORIOGEN

  • Referenced in 16 articles [sw07654]
  • values and that of the false discovery rate (FDR) relies on the number of bootstraps...
  • twilight

  • Referenced in 9 articles [sw06103]
  • observed under two conditions, the local false discovery rate describes the probability that a gene ... curve of p-values versus local false discovery rate offers an insight into the twilight ... stochastic downhill search to estimate local false discovery rates and effect size distributions. The package...
  • FDRSeg

  • Referenced in 9 articles [sw16730]
  • segmentation method, FDRSeg, which controls the false discovery rate (FDR) in the sense that...
  • qvalue

  • Referenced in 6 articles [sw22383]
  • package qvalue: Q-value estimation for false discovery rate control. This package takes a list ... false positives incurred (called the false discovery rate) when that particular test is called significant...
  • EFDR

  • Referenced in 8 articles [sw11106]
  • Signal Detection in Noisy Images. Enhanced False Discovery Rate (EFDR) is a tool to detect...
  • rp.flm.test

  • Referenced in 7 articles [sw28046]
  • efficient tests that exhibit root-n convergence rates and circumvent the curse of dimensionality ... different projections, by means of the false discovery rate method. The finite sample properties...
  • MCFDR

  • Referenced in 7 articles [sw11180]
  • MCFDR, a simple, novel algorithm for false discovery rate (FDR) modulated sequential Monte Carlo...
  • highTtest

  • Referenced in 4 articles [sw11203]
  • regions controlling the k-familywise error rate, false discovery rate, and the tail probability...
  • MMCTest

  • Referenced in 6 articles [sw11179]
  • that include the Benjamini and Hochberg false discovery rate procedure [{it Y. Benjamini...
  • FIMO

  • Referenced in 6 articles [sw17298]
  • value and then applies false discovery rate analysis to estimate a q-value for each...
  • smoothfdr

  • Referenced in 4 articles [sw27319]
  • False Discovery Rate Smoothing (smoothfdr). The smoothfdr package provides an empirical-Bayes method for exploiting ... manner that controls the overall false-discovery rate at a given level. This results...
  • locfdr

  • Referenced in 3 articles [sw30484]
  • package locfdr: Computes Local False Discovery Rates. Computation of local false discovery rates...
  • lpc

  • Referenced in 5 articles [sw11217]
  • provide a marked reduction in false discovery rates over the conventional methods on both real...
  • colcor

  • Referenced in 5 articles [sw12289]
  • gene, and apply false discovery rate (FDR) controlling methods to find interesting genes. For example...