
fdrtool
 Referenced in 29 articles
[sw08196]
 package fdrtool: Estimation of (Local) False Discovery Rates and Higher Criticism. This package allows ... estimate both tail areabased false discovery rates (Fdr) as well as local false discovery...

mixfdr
 Referenced in 17 articles
[sw06074]
 mixfdr: Computes false discovery rates and effect sizes using normal mixtures , This package fits normal ... estimates and local and tail area false discovery rates. To make this precise, suppose ... delta[i]=0z[i]) (local false discovery rates) and P(delta ... tail area false discovery rates...

SAM
 Referenced in 20 articles
[sw08356]
 Thresholding and False Discovery Rates for Detecting Differential Gene Expression in DNA Microarrays ... Some recently developed methodology for estimating false discovery rates and qvalues has been included...

FAMT
 Referenced in 25 articles
[sw11123]
 important parameter when controlling the false discovery rate) is also estimated from the FAMT model...

multtest
 Referenced in 20 articles
[sw08262]
 rate (gFWER), tail probability of the proportion of false positives (TPPFP), and false discovery rate...

TWILIGHT
 Referenced in 9 articles
[sw06788]
 Search Algorithm for Estimating the Local False Discovery Rate Screening for differential gene expression ... scale multiple testing problems. The local false discovery rate is a statistical concept for quantifying ... novel estimator for the local false discovery rate that is based on an algorithm which ... detecting the shape of the local false discovery rate and has a smaller bias with...

twilight
 Referenced in 9 articles
[sw06103]
 observed under two conditions, the local false discovery rate describes the probability that a gene ... curve of pvalues versus local false discovery rate offers an insight into the twilight ... stochastic downhill search to estimate local false discovery rates and effect size distributions. The package...

ORIOGEN
 Referenced in 15 articles
[sw07654]
 values and that of the false discovery rate (FDR) relies on the number of bootstraps...

EFDR
 Referenced in 8 articles
[sw11106]
 Signal Detection in Noisy Images. Enhanced False Discovery Rate (EFDR) is a tool to detect...

FDRSeg
 Referenced in 7 articles
[sw16730]
 segmentation method, FDRSeg, which controls the false discovery rate (FDR) in the sense that...

qvalue
 Referenced in 5 articles
[sw22383]
 package qvalue: Qvalue estimation for false discovery rate control. This package takes a list ... false positives incurred (called the false discovery rate) when that particular test is called significant...

highTtest
 Referenced in 4 articles
[sw11203]
 regions controlling the kfamilywise error rate, false discovery rate, and the tail probability...

MCFDR
 Referenced in 6 articles
[sw11180]
 MCFDR, a simple, novel algorithm for false discovery rate (FDR) modulated sequential Monte Carlo...

FIMO
 Referenced in 6 articles
[sw17298]
 value and then applies false discovery rate analysis to estimate a qvalue for each...

smoothfdr
 Referenced in 4 articles
[sw27319]
 False Discovery Rate Smoothing (smoothfdr). The smoothfdr package provides an empiricalBayes method for exploiting ... manner that controls the overall falsediscovery rate at a given level. This results...

locfdr
 Referenced in 3 articles
[sw30484]
 package locfdr: Computes Local False Discovery Rates. Computation of local false discovery rates...

MMCTest
 Referenced in 5 articles
[sw11179]
 that include the Benjamini and Hochberg false discovery rate procedure [{it Y. Benjamini...

lpc
 Referenced in 5 articles
[sw11217]
 provide a marked reduction in false discovery rates over the conventional methods on both real...

colcor
 Referenced in 5 articles
[sw12289]
 gene, and apply false discovery rate (FDR) controlling methods to find interesting genes. For example...

rp.flm.test
 Referenced in 4 articles
[sw28046]
 efficient tests that exhibit rootn convergence rates and circumvent the curse of dimensionality ... different projections, by means of the false discovery rate method. The finite sample properties...