• Matlab

  • Referenced in 10505 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • R

  • Referenced in 6593 articles [sw00771]
  • R is a language and environment for statistical...
  • MIRA

  • Referenced in 1 article [sw02392]
  • MIRA is a multi-pass DNA sequence data...
  • STAR

  • Referenced in 7 articles [sw02515]
  • STAR: ultrafast universal RNA-seq aligner. Motivation: Accurate...
  • Bioconductor

  • Referenced in 226 articles [sw04205]
  • Bioconductor provides tools for the analysis and comprehension...
  • GlobPlot

  • Referenced in 5 articles [sw06213]
  • GlobPlot: exploring protein sequences for globularity and disorder...
  • Biopython

  • Referenced in 11 articles [sw07357]
  • Biopython: freely available Python tools for computational molecular...
  • MAFFT

  • Referenced in 21 articles [sw08304]
  • MAFFT: Multiple alignment program for amino acid or...
  • Soap

  • Referenced in 24 articles [sw08915]
  • SOAP: short oligonucleotide alignment program. We have developed...
  • EMan

  • Referenced in 6 articles [sw09056]
  • EMAN: Semiautomated Software for High-Resolution Single-Particle...
  • PyMOL

  • Referenced in 29 articles [sw09662]
  • PyMOL is a powerful and comprehensive molecular visualization...
  • HMMER

  • Referenced in 13 articles [sw10514]
  • HMMER web server: interactive sequence similarity searching. HMMER...
  • bioperl

  • Referenced in 15 articles [sw10579]
  • The bioperl toolkit: Perl modules for the life...
  • Sweave

  • Referenced in 38 articles [sw10621]
  • Sweave is a tool that allows to embed...
  • EMBOSS

  • Referenced in 23 articles [sw10917]
  • EMBOSS is ”The European Molecular Biology Open Software...
  • SOPRA

  • Referenced in 7 articles [sw12607]
  • SOPRA: scaffolding algorithm for paired reads via statistical...
  • MUSCLE

  • Referenced in 50 articles [sw13193]
  • Muscle: multiple sequence alignment with high accuracy and...
  • GAGE

  • Referenced in 9 articles [sw13528]
  • GAGE: a critical evaluation of genome assemblies and...