
RNAKinetics
 Referenced in 4 articles
[sw23818]
 folding pathways, revealing important kinetic details that are not captured by the traditional structure prediction...

TChem
 Referenced in 2 articles
[sw12714]
 chemistry and facilitates the analysis of detailed kinetic models. The toolkit provide capabilities for thermodynamic ... efficient time advancement and analysis of detailed kinetic models...

ReaDDy
 Referenced in 3 articles
[sw17865]
 software package ReaDDy for simulation of detailed spatiotemporal mechanisms of dynamical processes in the cell ... contrast to other particlebased reaction kinetics programs, ReaDDy supports particle interaction potentials. This permits ... between smallscale but highly detailed molecular dynamics or Brownian dynamics ... simulations and largescale but littledetailed reaction kinetics simulations. ReaDDy has a modular design...

MPSalsa
 Referenced in 24 articles
[sw06960]
 spatial dimensions when coupled with a detailed, fundamental chemistry model. The goal of our research ... equal emphasis on fluid flow and chemical kinetics modeling. In our research, we focus...

PoKiTT
 Referenced in 1 article
[sw17486]
 data parallelism on heterogeneous architectures for detailed chemical kinetics, transport, and thermodynamics calculations. Simulating combustion...

OpenSMOKE++
 Referenced in 0 articles
[sw22162]
 numerical modeling of reactive systems with detailed kinetic mechanisms. OpenSMOKE++ is a general framework ... numerical simulations of reacting systems with detailed kinetic mechanisms, including thousands of chemical species ... point of view. Since simulations involving large kinetic mechanisms are very time consuming, OpenSMOKE++ adopts ... present paper we give a detailed description of the framework features, the numerical models available...

EPISO
 Referenced in 4 articles
[sw02494]
 velocitypressure coupling is then given in detail, along with a similar technique ... turbulence model, in this case the turbulence kinetic energy and its dissipation rate. The EPISO...

Viriato
 Referenced in 3 articles
[sw22282]
 appropriate limit) and (ii) the kinetic reduced MHD (KRMHD) equations (Schekochihin ... benchmarks and tests are presented, including a detailed analysis of 2D and 3D Orszag–Tang ... type decaying turbulence, both in fluid and kinetic regimes...

ECELL
 Referenced in 16 articles
[sw07917]
 simulation has isolated wellcharacterized pathways for detailed analysis, but methods for building integrative models ... rules of the developed cell model with kinetic parameters can be obtained...

MetaCrop
 Referenced in 1 article
[sw23102]
 different levels of detail from overview maps of primary metabolism to kinetic data of enzymes...

PARCS
 Referenced in 5 articles
[sw02913]
 OpenMP to the U. S. NRC neutron kinetics code PARCS POSIX Threads and OpenMP were ... modules using POSIX threads and OpenMP. A detailed analysis of the cache misses was performed...

SPICES1
 Referenced in 3 articles
[sw01173]
 SPICES1  a smartparticle code for kinetic plasma simulation. SPICES1 (Smart Particle In Cell ElectroStatic ... required to use SPICES1 are given in details. Several test cases and paradigmatic applications...

ADMIT
 Referenced in 1 article
[sw14284]
 Discriminating among these alternatives and estimating their kinetic parameters is crucial to improve the understanding ... tutorial and in the examples. A detailed understanding of the underlying mathematical concepts...

CPMCLab
 Referenced in 1 article
[sw19934]
 conditions. Importance sampling and all other algorithmic details of a total energy calculation are included ... dimensional lattices on total energy, kinetic energy, potential energy, and charge and spingaps...

ABCRATE
 Referenced in 2 articles
[sw00011]
 ABCRATE is a computer program that calculates rate...

LAPACK
 Referenced in 1490 articles
[sw00503]
 LAPACK is written in Fortran 90 and provides...

PARAMESH
 Referenced in 81 articles
[sw00677]
 In this paper we describe a community toolkit...

RKC
 Referenced in 95 articles
[sw00808]
 RKC: An explicit solver for parabolic PDEs. An...

SUNDIALS
 Referenced in 167 articles
[sw00927]
 SUNDIALS was implemented with the goal of providing...

UMFPACK
 Referenced in 274 articles
[sw00989]
 An ANSI C code for sparse LU factorization...