
edgeR
 Referenced in 45 articles
[sw06936]
 functional genomics applications. One of the fundamental data analysis tasks, especially for gene expression studies ... involves determining whether there is evidence that counts for a transcript or exon are significantly ... examining differential expression of replicated count data. An overdispersed Poisson model is used to account ... sequencing data, such as proteome peptide count data...

COUNT
 Referenced in 39 articles
[sw26562]
 COUNT: Functions, Data and Code for Count Data. Functions, data and code for Hilbe ... Press) and Hilbe, J.M. 2014. Modeling Count Data (Cambridge University Press...

Mplus
 Referenced in 321 articles
[sw06511]
 with either observed or unobserved heterogeneity, and data that contain missing values. Analyses ... binary, ordered categorical (ordinal), unordered categorical (nominal), counts, or combinations of these variable types ... capabilities for Monte Carlo simulation studies, where data can be generated and analyzed according...

DEseq
 Referenced in 48 articles
[sw10344]
 distribution. Estimate variancemean dependence in count data from highthroughput sequencing assays and test...

BayesLogit
 Referenced in 44 articles
[sw09312]
 Gamma latent variables. We propose a new dataaugmentation strategy for fully Bayesian inference ... effect models, and spatial models for count data. In each case, our dataaugmentation strategy...

DCL
 Referenced in 23 articles
[sw11087]
 adding the information of reported count data to a classical triangle of reserving data...

pscl
 Referenced in 19 articles
[sw07110]
 zeroinflated and hurdle models for count data; goodnessoffit measures for GLMs; data...

BaySeq
 Referenced in 17 articles
[sw10343]
 patterns of differential expression in count data. Results: We propose a framework for defining patterns...

addreg
 Referenced in 18 articles
[sw12107]
 take both right censored and counting process data...

MortalitySmooth
 Referenced in 11 articles
[sw10483]
 package provides a framework for smoothing count data in both one and twodimensional settings...

GWRM
 Referenced in 7 articles
[sw11197]
 generalized Waring regression model for count data. A regression model for count data based...

Surveillance
 Referenced in 26 articles
[sw00932]
 epidemic phenomena. This includes count, binary and categorical data time series as well as continuous...

LogXact
 Referenced in 15 articles
[sw12105]
 including continuous and binary, polytonomous, count, and missing data. Users of the software...

glmmML
 Referenced in 8 articles
[sw07509]
 Generalized linear models with clustered data: fixed and random effects models The statistical analysis ... mixed effects models for binary and count data is investigated. In the statistical computing environment...

DCluster
 Referenced in 8 articles
[sw08594]
 spatial clusters of disease using count data. Bootstrap is used to estimate sampling distributions...

qcc
 Referenced in 8 articles
[sw11593]
 control charts for continuous, attribute and count data. Cusum and EWMA charts. Operating characteristic curves...

Proc Traj
 Referenced in 12 articles
[sw11097]
 longitudinal data. Applications to psychometric scale data, offense counts, and a dichotomous prevalence measure...

QuasiSeq
 Referenced in 7 articles
[sw11359]
 differentially expressed genes in RNAseq count data using quasiPoisson or quasinegative binomial...

spatcounts
 Referenced in 6 articles
[sw13743]
 consider spatial regression models for count data. We examine not only the Poisson distribution...

geoBayes
 Referenced in 4 articles
[sw16727]
 data can be continuous, binary or count data and the models implemented are flexible. Conjugate...