• Bioconductor

  • Referenced in 219 articles [sw04205]
  • Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses ... software packages, and an active user community. Bioconductor is also available as an Amazon Machine...
  • gcrma

  • Referenced in 65 articles [sw06104]
  • gcrma: Background Adjustment Using Sequence Information Bioconductor version: Release (2.10) Background adjustment using sequence information...
  • edgeR

  • Referenced in 34 articles [sw06936]
  • edgeR: a Bioconductor package for differential expression analysis of digital gene expression data ... different across experimental conditions. edgeR is a Bioconductor software package for examining differential expression...
  • vsn

  • Referenced in 25 articles [sw06105]
  • Variance stabilization and calibration for microarray data Bioconductor version: Release (2.10) The package implements...
  • affy

  • Referenced in 19 articles [sw08345]
  • Public License. It is part of the Bioconductor project and can be obtained from...
  • flowClust

  • Referenced in 16 articles [sw14266]
  • flowClust Bioconductor package: Robust model-based clustering using a t-mixture model with...
  • graph

  • Referenced in 12 articles [sw08267]
  • package to handle graph data structures. Bioconductor version: Release (2.13). A package that implements some...
  • TWILIGHT

  • Referenced in 8 articles [sw06788]
  • genes. Our algorithm is implemented in the Bioconductor compatible R package TWILIGHT version 1.0.1, which ... from http://compdiag.molgen.mpg.de/software or from the Bioconductor project at http://www.bioconductor.org...
  • KEGGgraph

  • Referenced in 8 articles [sw06934]
  • approach to KEGG PATHWAY in R and bioconductor. Motivation: KEGG PATHWAY is a service ... software package KEGGgraph in R and Bioconductor, an interface between KEGG pathways and graph models...
  • marrayClasses

  • Referenced in 7 articles [sw08346]
  • Bioconductor R Packages for Exploratory Analysis and Normalization of cDNA Microarray Data. This chapter describes ... packages were developed as part of the Bioconductor project, which aims more generally to produce...
  • daMA

  • Referenced in 8 articles [sw06093]
  • Bioconductor version: Release (2.10) This package contains functions for the efficient design of factorial...
  • Affycomp III

  • Referenced in 8 articles [sw14610]
  • graphics toolbox as part of the Bioconductor project (http://www.bioconductor.org), a webtool is available...
  • BGX

  • Referenced in 5 articles [sw06935]
  • Bioconductor package for the Bayesian integrated analysis of Affymetrix GeneChips. BGX is a new Bioconductor...
  • marrayInput

  • Referenced in 5 articles [sw08347]
  • Bioconductor R Packages for Exploratory Analysis and Normalization of cDNA Microarray Data. This chapter describes ... packages were developed as part of the Bioconductor project, which aims more generally to produce...
  • marrayNorm

  • Referenced in 5 articles [sw08348]
  • Bioconductor R Packages for Exploratory Analysis and Normalization of cDNA Microarray Data. This chapter describes ... packages were developed as part of the Bioconductor project, which aims more generally to produce...
  • marrayPlots

  • Referenced in 5 articles [sw08349]
  • Bioconductor R Packages for Exploratory Analysis and Normalization of cDNA Microarray Data. This chapter describes ... packages were developed as part of the Bioconductor project, which aims more generally to produce...
  • maSigPro

  • Referenced in 7 articles [sw11024]
  • freely available from the Bioconductor contributed packages repository and from http://www.ivia.es/centrogenomica/bioinformatics.htm...
  • Ebimage

  • Referenced in 7 articles [sw18998]
  • LGPL license and available from the Bioconductor project (http://www.bioconductor.org/packages/release/bioc/html/EBImage.html)....
  • GEOquery

  • Referenced in 3 articles [sw17285]
  • between the Gene Expression Omnibus (GEO) and BioConductor. Microarray technology has become a standard molecular ... nearly 140 000 gene expression experiments. The BioConductor project (Gentleman ... genomic data. The tools contained in the BioConductor project represent many state ... wealth of information within GEO directly from BioConductor, eliminating many the formatting and parsing problems...
  • snpStats

  • Referenced in 6 articles [sw11396]
  • snpStats: SnpMatrix and XSnpMatrix classes and methods. Bioconductor. Classes and statistical methods for large...