• RSEM

  • Referenced in 7 articles [sw17160]
  • data. RSEM outputs abundance estimates, 95% credibility intervals, and visualization files and can also simulate ... show that accurate gene-level abundance estimates are best obtained with large numbers of short ... single-end reads. On the other hand, estimates of the relative frequencies of isoforms within ... user-friendly software tool for quantifying transcript abundances from RNA-Seq data. As it does...
  • marked

  • Referenced in 3 articles [sw14404]
  • Mark-Recapture Analysis for Survival and Abundance Estimation. Functions for fitting various models to capture ... POPAN structured Jolly-Seber models for abundance estimation. Includes a CJS models that concurrently estimates...
  • HDDM

  • Referenced in 8 articles [sw16420]
  • model to data, current estimation methods require an abundance of response time measurements to recover...
  • Rdistance

  • Referenced in 1 article [sw28685]
  • Distance-Sampling Analyses for Density and Abundance Estimation. Distance-sampling is a popular method ... estimating density and abundance of organisms in ecology. Rdistance contains routines that assist with analysis ... site-level (transect or point) abundance estimates are available. A large suite of classical, parametric...
  • mrds

  • Referenced in 1 article [sw16309]
  • package mrds. Animal abundance estimation via conventional, multiple covariate and mark-recapture distance sampling (CDS/MCDS/MRDS ... plotting for fitted detection functions. Abundance estimation is via a Horvitz-Thompson-like estimator...
  • FC-TLBO

  • Referenced in 1 article [sw22855]
  • fully constrained meta-heuristic algorithm for abundance estimation using linear mixing model. A study ... abundance estimation has vital importance in spectral unmixing of hyperspectral image. Recently, various methods have ... into a combinatorial optimisation problem by introducing abundance sum to one constraint and abundance...
  • caribou

  • Referenced in 1 article [sw27387]
  • package caribou: Estimation of caribou abundance based on large scale aggregations monitored by radio telemetry ... This is a package for estimating the population size of migratory caribou herds based ... Rivest et al. (1998) about caribou abundance estimation. It also includes a function based...
  • multimark

  • Referenced in 1 article [sw16691]
  • patterns of bilaterally asymmetrical species, to estimate abundance and related demographic parameters while accounting...
  • Popan

  • Referenced in 2 articles [sw17040]
  • capture rates. POPAN, in addition, permits estimation of abundance and recruitment rates...
  • Distance

  • Referenced in 2 articles [sw16303]
  • constraints and binning are supported. Abundance and density estimates can also be calculated...
  • rSeqDiff

  • Referenced in 2 articles [sw27647]
  • that our approach provides accurate estimates of isoform abundances and biological meaningful rankings of differentially...
  • jointNmix

  • Referenced in 1 article [sw25548]
  • site-associated species. Includes functions to estimate latent abundances through empirical Bayes methods...
  • dsm

  • Referenced in 1 article [sw16304]
  • used to calculate spatially-explicit estimates of animal abundance from distance sampling (also presence/absence ... provided for model checking, plotting and variance estimation...
  • Zelig

  • Referenced in 9 articles [sw17526]
  • Software. A framework that brings together an abundance of common statistical models found across packages ... interface, and provides a common architecture for estimation and interpretation, as well as bridging functions...
  • EMIRGE

  • Referenced in 1 article [sw17155]
  • subunit gene sequences and provides estimates of relative taxon abundances. We apply the method...
  • CatDyn

  • Referenced in 0 articles [sw30315]
  • from one or two fishing fleets, estimate stock abundance, natural mortality rate, and fishing operational...
  • PaxDb

  • Referenced in 1 article [sw29371]
  • intrinsic, “typical” range of functionally effective abundance levels. These extend from a few molecules ... work, a simple rough estimate of the average wild type abundance of each detectable protein...
  • DISOPRED

  • Referenced in 3 articles [sw16908]
  • Dynamically disordered regions appear to be relatively abundant in eukaryotic proteomes. The DISOPRED server allows ... protein sequence, and returns a probability estimate of each residue in the sequence being disordered...
  • ws2m

  • Referenced in 2 articles [sw24870]
  • controllable) variety of estimators to produce the estimates. It also reports the number of individuals ... collection. It can report species-abundance distributions and Jaccard indices...
  • DRECON

  • Referenced in 1 article [sw09088]
  • utilize the abundant block RAMs available and therefore have minimal overheads. We estimate the cost...