
APBS
 Referenced in 76 articles
[sw05766]
 numerical solution of the PoissonBoltzmann equation (PBE), one of the most popular continuum models...

TABI
 Referenced in 17 articles
[sw18194]
 solvated biomolecules described by the linear PoissonBoltzmann equation. The method employs a wellconditioned ... surface is triangulated and the integral equations are discretized by centroid collocation. The linear system ... compare results for the PoissonBoltzmann and Poisson equations. We show that the treecode approximation...

AFMPB
 Referenced in 6 articles
[sw08875]
 described an adaptive fast multipole PoissonBoltzmann solver for computing the electrostatics in biomolecules. This ... boundary integral equation of the linearized PoissonBoltzmann equation. Numerical experiments show the efficiency...

PBEQSolver
 Referenced in 10 articles
[sw17203]
 read biomolecular structures, solve the PoissonBoltzmann (PB) equations and interactively visualize the electrostatic potential...

SDPBS
 Referenced in 4 articles
[sw17208]
 electrostatics of ionic solvated biomolecules. The PoissonBoltzmann equation (PBE) is one important implicit solvent...

PyGBe
 Referenced in 3 articles
[sw17642]
 Lenhoff (1990) for solving the PoissonBoltzmann equation of the implicitsolvent model in integral...

Apbsmem
 Referenced in 3 articles
[sw22298]
 numerically solve the PoissonBoltzmann (PB) equation, and there are several easytouse software ... packages available that solve the PB equation for soluble proteins. Here we present a freely ... PoissonBoltzmann Solver (APBS) is used as a backend for solving the PB equation...

SMPBS
 Referenced in 2 articles
[sw23654]
 library of size modified PoissonBoltzmann equation (SMPBE) solvers that incorporates finite element, finite difference ... SDPBS web server, uses the classic PoissonBoltzmann model...

ManifoldCode
 Referenced in 1 article
[sw06974]
 order nonlinear elliptic systems of partial differential equations on domains with the structure of Riemannian ... problems such as the nonlinear PoissonBoltzmann equation arising in biophysics, the driftdiffusion semiconductor...

DelEnsembleElec
 Referenced in 1 article
[sw21782]
 ensembleaveraged electrostatic calculations using the PoissonBoltzmann equation is presented. The general theory...

PBAM
 Referenced in 0 articles
[sw16459]
 PoissonBoltzmann Analytical Method (PBAM), a fully analytical solution to the linearized Poisson Boltzmann ... equation. The PBAM software package includes the generation of outputs files appropriate for visualization ... been integrated into the Adaptive PoissonBoltzmann Solver (APBS) software package to make it more...

BEMLIB
 Referenced in 82 articles
[sw00005]
 BEMLIB is a boundaryelement software library of...

FLAME
 Referenced in 37 articles
[sw00293]
 We present a number of application program interfaces...

LAPACK
 Referenced in 1504 articles
[sw00503]
 LAPACK is written in Fortran 90 and provides...

Maple
 Referenced in 4690 articles
[sw00545]
 The result of over 30 years of cutting...

Mathematica
 Referenced in 5199 articles
[sw00554]
 Almost any workflow involves computing results, and that...

Matlab
 Referenced in 10411 articles
[sw00558]
 MATLAB® is a highlevel language and interactive...

ORTHPOL
 Referenced in 68 articles
[sw00659]
 Algorithm 726: ORTHPOL—A package of routines for...

ScaLAPACK
 Referenced in 377 articles
[sw00830]
 ScaLAPACK is an acronym for scalable linear algebra...

TNPACK
 Referenced in 39 articles
[sw00970]
 We present a FORTRAN package of subprograms for...