• APBS

  • Referenced in 76 articles [sw05766]
  • numerical solution of the Poisson-Boltzmann equation (PBE), one of the most popular continuum models...
  • TABI

  • Referenced in 17 articles [sw18194]
  • solvated biomolecules described by the linear Poisson-Boltzmann equation. The method employs a well-conditioned ... surface is triangulated and the integral equations are discretized by centroid collocation. The linear system ... compare results for the Poisson-Boltzmann and Poisson equations. We show that the treecode approximation...
  • AFMPB

  • Referenced in 6 articles [sw08875]
  • described an adaptive fast multipole Poisson-Boltzmann solver for computing the electrostatics in biomolecules. This ... boundary integral equation of the linearized Poisson-Boltzmann equation. Numerical experiments show the efficiency...
  • PBEQ-Solver

  • Referenced in 10 articles [sw17203]
  • read biomolecular structures, solve the Poisson-Boltzmann (PB) equations and interactively visualize the electrostatic potential...
  • SDPBS

  • Referenced in 4 articles [sw17208]
  • electrostatics of ionic solvated biomolecules. The Poisson-Boltzmann equation (PBE) is one important implicit solvent...
  • PyGBe

  • Referenced in 3 articles [sw17642]
  • Lenhoff (1990) for solving the Poisson-Boltzmann equation of the implicit-solvent model in integral...
  • Apbsmem

  • Referenced in 3 articles [sw22298]
  • numerically solve the Poisson-Boltzmann (PB) equation, and there are several easy-to-use software ... packages available that solve the PB equation for soluble proteins. Here we present a freely ... Poisson-Boltzmann Solver (APBS) is used as a back-end for solving the PB equation...
  • SMPBS

  • Referenced in 2 articles [sw23654]
  • library of size modified Poisson-Boltzmann equation (SMPBE) solvers that incorporates finite element, finite difference ... SDPBS web server, uses the classic Poisson-Boltzmann model...
  • ManifoldCode

  • Referenced in 1 article [sw06974]
  • order nonlinear elliptic systems of partial differential equations on domains with the structure of Riemannian ... problems such as the nonlinear Poisson-Boltzmann equation arising in biophysics, the drift-diffusion semiconductor...
  • DelEnsembleElec

  • Referenced in 1 article [sw21782]
  • ensemble-averaged electrostatic calculations using the Poisson-Boltzmann equation is presented. The general theory...
  • PB-AM

  • Referenced in 0 articles [sw16459]
  • Poisson-Boltzmann Analytical Method (PB-AM), a fully analytical solution to the linearized Poisson Boltzmann ... equation. The PB-AM software package includes the generation of outputs files appropriate for visualization ... been integrated into the Adaptive Poisson-Boltzmann Solver (APBS) software package to make it more...
  • BEMLIB

  • Referenced in 82 articles [sw00005]
  • BEMLIB is a boundary-element software library of...
  • FLAME

  • Referenced in 37 articles [sw00293]
  • We present a number of application program interfaces...
  • LAPACK

  • Referenced in 1504 articles [sw00503]
  • LAPACK is written in Fortran 90 and provides...
  • Maple

  • Referenced in 4690 articles [sw00545]
  • The result of over 30 years of cutting...
  • Mathematica

  • Referenced in 5199 articles [sw00554]
  • Almost any workflow involves computing results, and that...
  • Matlab

  • Referenced in 10411 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • ORTHPOL

  • Referenced in 68 articles [sw00659]
  • Algorithm 726: ORTHPOL—A package of routines for...
  • ScaLAPACK

  • Referenced in 377 articles [sw00830]
  • ScaLAPACK is an acronym for scalable linear algebra...
  • TNPACK

  • Referenced in 39 articles [sw00970]
  • We present a FORTRAN package of subprograms for...