• R

  • Referenced in 7624 articles [sw00771]
  • R is a language and environment for statistical...
  • MIRA

  • Referenced in 1 article [sw02392]
  • MIRA is a multi-pass DNA sequence data...
  • STAR

  • Referenced in 11 articles [sw02515]
  • STAR: ultrafast universal RNA-seq aligner. Motivation: Accurate...
  • SDPT3

  • Referenced in 594 articles [sw04009]
  • This software is designed to solve conic programming...
  • Bioconductor

  • Referenced in 281 articles [sw04205]
  • Bioconductor provides tools for the analysis and comprehension...
  • CVX

  • Referenced in 652 articles [sw04594]
  • CVX is a modeling system for constructing and...
  • GlobPlot

  • Referenced in 8 articles [sw06213]
  • GlobPlot: exploring protein sequences for globularity and disorder...
  • Biopython

  • Referenced in 16 articles [sw07357]
  • Biopython: freely available Python tools for computational molecular...
  • MAFFT

  • Referenced in 31 articles [sw08304]
  • MAFFT: Multiple alignment program for amino acid or...
  • Soap

  • Referenced in 34 articles [sw08915]
  • SOAP: short oligonucleotide alignment program. We have developed...
  • EMan

  • Referenced in 8 articles [sw09056]
  • EMAN: Semiautomated Software for High-Resolution Single-Particle...
  • PyMOL

  • Referenced in 38 articles [sw09662]
  • PyMOL is a powerful and comprehensive molecular visualization...
  • HMMER

  • Referenced in 17 articles [sw10514]
  • HMMER web server: interactive sequence similarity searching. HMMER...
  • bioperl

  • Referenced in 20 articles [sw10579]
  • The bioperl toolkit: Perl modules for the life...
  • Sweave

  • Referenced in 39 articles [sw10621]
  • Sweave is a tool that allows to embed...
  • EMBOSS

  • Referenced in 33 articles [sw10917]
  • EMBOSS is ”The European Molecular Biology Open Software...
  • SOPRA

  • Referenced in 7 articles [sw12607]
  • SOPRA: scaffolding algorithm for paired reads via statistical...
  • MUSCLE

  • Referenced in 69 articles [sw13193]
  • Muscle: multiple sequence alignment with high accuracy and...